Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_O01
         (647 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0561 + 4171812-4172144,4173468-4174253                           28   5.6  
09_04_0214 + 15711576-15711891,15712615-15713903,15714410-157151...    27   9.7  
02_04_0056 + 19313422-19313967,19314035-19314168,19314263-193143...    27   9.7  
01_01_0808 + 6287428-6287683,6287801-6288016,6288165-6288310,629...    27   9.7  

>07_01_0561 + 4171812-4172144,4173468-4174253
          Length = 372

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +3

Query: 447 IKPNGPIPKNYFFHLSVENLNGNENDVPVV 536
           I P G +  N++  L  E L G END PVV
Sbjct: 320 IGPQGELNDNFWEELLNEGLVGEENDNPVV 349


>09_04_0214 +
           15711576-15711891,15712615-15713903,15714410-15715117,
           15715369-15715908
          Length = 950

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 19/79 (24%), Positives = 37/79 (46%)
 Frame = +3

Query: 213 NSMSLKGPALTRYDPCGLGIIYFDRLAYKHWQGVVNFGLYNNLIEAEMEIYFEKEVRIID 392
           ++ ++ GP   ++D  G        L  +  +G++NF   N + + E E+Y  +     D
Sbjct: 755 HNYTMVGPTY-KFDGFGFAFPLGSPLTAEISRGILNFTSSNRMAQLERELYNNRTCPDKD 813

Query: 393 VSQNTSFLEISNNRRDFVI 449
            SQ +S L + +    F+I
Sbjct: 814 DSQTSSSLTLRSFLGLFII 832


>02_04_0056 +
           19313422-19313967,19314035-19314168,19314263-19314398,
           19314870-19314923,19314995-19315135,19315220-19315546,
           19315647-19315916,19316080-19316226,19316890-19317045,
           19317223-19317290,19318210-19318309,19318696-19318985,
           19319074-19319274,19319840-19319902,19320263-19320356,
           19320964-19321035,19321979-19322077,19322254-19322376
          Length = 1006

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 17/66 (25%), Positives = 27/66 (40%)
 Frame = -2

Query: 361 ISISASIKLLYKPKLTTPCQCLYANRSK*IIPNPQGSYLVSAGPFKDIEFTPTNSKNKKQ 182
           +S+  +  + +  K +TP     A       P P    L    PFK   FTP +  ++K+
Sbjct: 226 VSVYINSSMFHGQKQSTPKAARAATEDSTFHPLPALFKLTGLSPFKKAAFTPEDLYSRKR 285

Query: 181 LFVKKS 164
               KS
Sbjct: 286 PLETKS 291


>01_01_0808 +
           6287428-6287683,6287801-6288016,6288165-6288310,
           6290305-6290584,6290969-6291165
          Length = 364

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
 Frame = +2

Query: 149 SQK*NGFFYKELFFV--FTIRGSKFNVFERT 235
           +Q+  GFF+K LFF+  F +    F+VF +T
Sbjct: 156 AQECKGFFHKSLFFMGEFGVNDYSFSVFGKT 186


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,996,996
Number of Sequences: 37544
Number of extensions: 256242
Number of successful extensions: 551
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 541
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 551
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)