Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0002_N24
(631 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 86 3e-18
SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 48 1e-06
SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 40 3e-04
SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces pomb... 40 4e-04
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom... 40 4e-04
SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8 |Schizosacch... 40 4e-04
SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3 |Schi... 38 0.001
SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizo... 36 0.005
SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3 B... 34 0.015
SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1 |Sc... 33 0.026
SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3 Brl2|Schizosa... 29 0.42
SPAC23A1.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 29 0.42
SPAC959.03c |||U3 snoRNP-associated protein Utp7|Schizosaccharom... 28 1.3
SPBC36.01c |||spermidine family transporter |Schizosaccharomyces... 27 2.2
SPBC2A9.06c |||di-trans,poly-cis-decaprenylcistransferase|Schizo... 26 5.2
SPBC1709.15c |cft2||cleavage factor two Cft2/polyadenylation fac... 26 5.2
SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering compo... 25 6.8
SPBC530.06c |||translation initiation factor eIF3 alpha subunit ... 25 6.8
SPCC550.05 |nse1||Smc5-6 complex non-SMC subunit 1|Schizosacchar... 25 9.0
SPAC6B12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 25 9.0
SPAC343.18 |rfp2||ubiquitin-protein ligase E3 Rfp2|Schizosacchar... 25 9.0
SPBC17A3.06 |||phosphoprotein phosphatase|Schizosaccharomyces po... 25 9.0
>SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 673
Score = 86.2 bits (204), Expect = 3e-18
Identities = 45/119 (37%), Positives = 65/119 (54%), Gaps = 4/119 (3%)
Frame = +3
Query: 132 NLNHLLNFMYPSRGNQEHTERKGIQVYRRPNHLRVNRRHEHDL--YLRAYCQFVVKEGGD 305
NLNHLLNF + R N + + + + H D Y+ A +FVV GD
Sbjct: 124 NLNHLLNFQFTPRTNSNAFSAPPRRSRGYNTYGQGSGHHPMDKSRYVNANYRFVVSPIGD 183
Query: 306 YKVNLLDPDIPIKWEQIEEIIVRSTGR-SECPICL-GAPAAGRVSHCGHVYCWACVLHY 476
Y+ LDPD P+KWE + +++ S + + CP CL P A R+S CGHVYC++C+L +
Sbjct: 184 YQSQKLDPDSPVKWEDVWQVLCSSDFQLAACPFCLEEKPVAARMSRCGHVYCFSCLLRF 242
>SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 468
Score = 48.0 bits (109), Expect = 1e-06
Identities = 20/55 (36%), Positives = 28/55 (50%)
Frame = +3
Query: 390 ECPICLGAPAAGRVSHCGHVYCWACVLHYAAAHDKQPPPCPVCTTPLHVKDMKPY 554
ECPIC A +HCGH YC+ C+L++ K+ CP C L+ + Y
Sbjct: 84 ECPICTEALQRPFTTHCGHTYCYECLLNWL----KESKSCPTCRQKLYTQPSPAY 134
>SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 486
Score = 39.9 bits (89), Expect = 3e-04
Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = +3
Query: 354 IEEIIVRSTGRS-ECPICLGAPAAGRVSHCGHVYCWACVLHYAAAHDKQPPPCPVC 518
+E+++ + R EC IC G VS CGH +C C++ Q P CP C
Sbjct: 155 MEDLLQENVSRELECQICFGMLYDPVVSPCGHTFCGPCLMQALT----QSPQCPTC 206
>SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 387
Score = 39.5 bits (88), Expect = 4e-04
Identities = 22/73 (30%), Positives = 30/73 (41%), Gaps = 1/73 (1%)
Frame = +3
Query: 312 VNLLDPDIPIKWEQIEEIIVRSTGRS-ECPICLGAPAAGRVSHCGHVYCWACVLHYAAAH 488
+N LD P W Q + ++ S C IC A ++ C H +C C+ Y H
Sbjct: 1 MNELDATDPSDWNQTKIPSLKGLDSSLRCLICHEYFRAPLITSCSHTFCSFCIRDYLREH 60
Query: 489 DKQPPPCPVCTTP 527
P CP C P
Sbjct: 61 ----PMCPACRAP 69
>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1375
Score = 39.5 bits (88), Expect = 4e-04
Identities = 19/59 (32%), Positives = 29/59 (49%)
Frame = +3
Query: 357 EEIIVRSTGRSECPICLGAPAAGRVSHCGHVYCWACVLHYAAAHDKQPPPCPVCTTPLH 533
E I++++ C IC G ++ CGH+YC C+ A K CP+C T L+
Sbjct: 1080 EHIVLKAESHQICIICRDIIKQGFITTCGHLYCSFCL----EAWLKHSSSCPMCKTKLN 1134
>SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 269
Score = 39.5 bits (88), Expect = 4e-04
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = +3
Query: 390 ECPICLGAPAAGRVSHCGHVYCWACVLHYAAAHDKQPPPCPVCTTPLH 533
+C ICL +P + CGH++C C+L A CPVC +H
Sbjct: 205 KCVICLDSPENLSCTPCGHIFCNFCILS-ALGTTAATQKCPVCRRKVH 251
>SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 306
Score = 37.9 bits (84), Expect = 0.001
Identities = 12/46 (26%), Positives = 24/46 (52%)
Frame = +3
Query: 381 GRSECPICLGAPAAGRVSHCGHVYCWACVLHYAAAHDKQPPPCPVC 518
G +C +C+ + CGH++CW+C+ + + + CP+C
Sbjct: 252 GNRKCSLCMEFIHCPAATECGHIFCWSCINGWTSKKSE----CPLC 293
>SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog
Rhp16|Schizosaccharomyces pombe|chr 3|||Manual
Length = 963
Score = 35.9 bits (79), Expect = 0.005
Identities = 18/49 (36%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Frame = +3
Query: 393 CPICLGAPAAGRVSHCGHVYCWACVLHYA-AAHDKQPPPCPVCTTPLHV 536
C IC S C H +C CV Y AA D + CP C PL +
Sbjct: 711 CKICDEVAQDAIESRCHHTFCRLCVTEYINAAGDGENVNCPSCFIPLSI 759
>SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3
Brl1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 692
Score = 34.3 bits (75), Expect = 0.015
Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = +3
Query: 381 GRSECPICLGAPAAGR-VSHCGHVYCWACVLHYAAAHDKQPPPCPVCTTPLHVKDM 545
G +C +C + + + +CGH +C C+ + ++ + CP C TP V D+
Sbjct: 635 GMLKCSVCNFSNWKSKLIPNCGHAFCSNCMEPF---YEHKTSTCPQCETPFSVSDI 687
>SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1233
Score = 33.5 bits (73), Expect = 0.026
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = +3
Query: 36 PGFPMGGTQNTRLEDSDEPELGSV 107
P FP+GGT L+D DEP LG +
Sbjct: 1092 PAFPLGGTAYLTLDDLDEPYLGGI 1115
>SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3
Brl2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 680
Score = 29.5 bits (63), Expect = 0.42
Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Frame = +3
Query: 390 ECPICLGAPAAGRV-SHCGHVYCWACVLHYAAAHDKQPPPCPVCTTPLHVKDMKP 551
+C +C R+ S CGH +C+ C+ ++ CP+C D+ P
Sbjct: 626 KCSVCNFERWKDRIISLCGHGFCYQCIQKRIETRQRR---CPICGRGFGASDVIP 677
>SPAC23A1.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 251
Score = 29.5 bits (63), Expect = 0.42
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +3
Query: 438 CGHVYCWACVLHYAAAHDKQPPPCPVC 518
CGH YC+AC++ + CP+C
Sbjct: 213 CGHTYCYACIMSRLKLVNN--VSCPIC 237
>SPAC959.03c |||U3 snoRNP-associated protein
Utp7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 520
Score = 27.9 bits (59), Expect = 1.3
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = +3
Query: 102 SVFVPGSKKQNLNHLLNFMYPSRGNQEHTERKGIQVYRRPNHLRVN 239
S+ VPGS + N + N + SR ++ TE + + RP + +N
Sbjct: 375 SIIVPGSGEPNYDSYENDPFASRKQRQETEVRQLLEKLRPEMISLN 420
>SPBC36.01c |||spermidine family transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 580
Score = 27.1 bits (57), Expect = 2.2
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +3
Query: 81 SDEPELGSVFVPGSKKQNLNHLLNFMYPSRGNQEHTE 191
+D P L V GS +NL++ + YP+ GN E
Sbjct: 37 TDNPSLYQVPTHGSLYRNLSNSASAYYPANGNMNSRE 73
>SPBC2A9.06c |||di-trans,
poly-cis-decaprenylcistransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 258
Score = 25.8 bits (54), Expect = 5.2
Identities = 8/14 (57%), Positives = 9/14 (64%)
Frame = -2
Query: 339 WVCQGLTNLLYNHH 298
W C L N LY+HH
Sbjct: 30 WTCSYLLNFLYHHH 43
>SPBC1709.15c |cft2||cleavage factor two Cft2/polyadenylation factor
CPSF-73 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 797
Score = 25.8 bits (54), Expect = 5.2
Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 4/44 (9%)
Frame = +1
Query: 463 VCCIMQLHMISSLP----PVQFAQPHYMSKI*SPTKMVQWSTSN 582
+CCI+ H +S P P+ F P I M++W N
Sbjct: 238 LCCILDNHWSASQPPLPFPILFLSPTSTKTIDYAKSMIEWMGDN 281
>SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering
component Pep7 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 536
Score = 25.4 bits (53), Expect = 6.8
Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 7/70 (10%)
Frame = +3
Query: 312 VNLLDPDIPIKWEQIEEIIVRSTGRSE---CPICLGA-PAAGRVSHC---GHVYCWACVL 470
V++LD + K +++E+ IV S CP C + R HC G V C CVL
Sbjct: 251 VSMLDALLLNKAKRLEQSIVHWQDDSVVQICPECNNSFTLTRRRRHCRLCGRVICRFCVL 310
Query: 471 HYAAAHDKQP 500
+ QP
Sbjct: 311 EISLPQHPQP 320
>SPBC530.06c |||translation initiation factor eIF3 alpha subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 25.4 bits (53), Expect = 6.8
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = -3
Query: 203 YTFTLSMLLISSGWVHEIQQMVQILLFTSRH 111
+T TLS L+ S +H+++Q++ L+ H
Sbjct: 41 HTQTLSFSLLLSNTIHDVRQVILELMLAPPH 71
>SPCC550.05 |nse1||Smc5-6 complex non-SMC subunit
1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 232
Score = 25.0 bits (52), Expect = 9.0
Identities = 13/31 (41%), Positives = 14/31 (45%), Gaps = 3/31 (9%)
Frame = +3
Query: 390 ECPICLGAPAAGRVSHCG---HVYCWACVLH 473
EC C AG V CG HVYC + H
Sbjct: 183 ECNACREIVIAGYVCDCGYCLHVYCCKHLAH 213
>SPAC6B12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 456
Score = 25.0 bits (52), Expect = 9.0
Identities = 12/43 (27%), Positives = 18/43 (41%)
Frame = +3
Query: 390 ECPICLGAPAAGRVSHCGHVYCWACVLHYAAAHDKQPPPCPVC 518
EC IC C HV+C C++ ++ CP+C
Sbjct: 359 ECAICSNVAYKPVRLGCSHVFCLHCLI---ILQKQKVDFCPLC 398
>SPAC343.18 |rfp2||ubiquitin-protein ligase E3
Rfp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 205
Score = 25.0 bits (52), Expect = 9.0
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +3
Query: 438 CGHVYCWACVLHYAAAHDKQPPPCPV 515
CGH++C C A K+ PCPV
Sbjct: 167 CGHLFCSTC----AKELRKKTVPCPV 188
>SPBC17A3.06 |||phosphoprotein phosphatase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 330
Score = 25.0 bits (52), Expect = 9.0
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +3
Query: 336 PIKWEQIEEIIVRSTGRSECPIC 404
PI+W Q E + GR +CP C
Sbjct: 270 PIRWMQPELELGNLEGRFDCPKC 292
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,792,449
Number of Sequences: 5004
Number of extensions: 60061
Number of successful extensions: 172
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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