Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_N24
         (631 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    26   0.35 
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   1.9  
DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.              22   5.7  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    22   5.7  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    21   9.9  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    21   9.9  

>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 25.8 bits (54), Expect = 0.35
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = -3

Query: 356 NLLPLDGYVRV*QIYFIITTLFHNKLTVCSQIEIMFMSTVY 234
           N LP   Y++  +I+F+  T+F       + +E  F++T+Y
Sbjct: 283 NSLPKVSYIKASEIWFLGCTIF----LFAAMVEFAFVNTIY 319


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = +3

Query: 138 NHLLNFMYPSRGNQEHTERKG-IQVYRRPNH 227
           N+LLN +Y + G   HT   G   ++  P+H
Sbjct: 402 NNLLNNVYSTPGPHHHTMGHGHSHIHATPHH 432


>DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.
          Length = 120

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 7/28 (25%), Positives = 12/28 (42%)
 Frame = -3

Query: 491 IMCSCIMQHTCPTVNMSAVTHTTCRWCP 408
           + C  +  +TCP          T ++CP
Sbjct: 65  VSCPVLRAYTCPICGACGDIAHTVKYCP 92


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +3

Query: 510 PVCTTPLHVKDMK 548
           PVC   LHV D+K
Sbjct: 149 PVCAPKLHVFDLK 161


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 7/11 (63%), Positives = 11/11 (100%)
 Frame = -2

Query: 498 AAYHVQLHNAA 466
           AAY+V+LHN++
Sbjct: 464 AAYNVELHNSS 474


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 7/11 (63%), Positives = 11/11 (100%)
 Frame = -2

Query: 498 AAYHVQLHNAA 466
           AAY+V+LHN++
Sbjct: 502 AAYNVELHNSS 512


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,054
Number of Sequences: 438
Number of extensions: 4234
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18826962
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)