Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_N23
         (428 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16C9.02c |||S-methyl-5-thioadenosine phosphorylase|Schizosac...    29   0.40 
SPAC140.01 |sdh2||succinate dehydrogenase |Schizosaccharomyces p...    27   1.2  
SPAP27G11.15 |slx1||structure-specific endonuclease catalytic su...    27   1.2  
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo...    26   2.2  
SPCC24B10.17 |emp24||COPII-coated vesicle component Emp24 |Schiz...    25   5.0  
SPAC9.13c |cwf16|SPAPJ735.01c|splicing factor |Schizosaccharomyc...    25   5.0  
SPAP32A8.02 |||xylose and arabinose reductase |Schizosaccharomyc...    24   8.7  

>SPAC16C9.02c |||S-methyl-5-thioadenosine
           phosphorylase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 307

 Score = 28.7 bits (61), Expect = 0.40
 Identities = 14/50 (28%), Positives = 26/50 (52%)
 Frame = +1

Query: 160 LGRQDGIKQEWLIEDTIGNWWRPNFEPPQYPYIPPHITKPKEHKRLFLVQ 309
           L R+  I  + +   T  + WR N EP     +  HI+  K++ ++FL++
Sbjct: 206 LAREAEIAYQMVCMATDYDCWRMNEEPVTVETVMEHISNNKDNAKIFLLE 255


>SPAC140.01 |sdh2||succinate dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 252

 Score = 27.1 bits (57), Expect = 1.2
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +2

Query: 308 NCRTGLCSRCQRTINWSQHLCLSC 379
           +CR G+C  C   IN S  L   C
Sbjct: 74  SCREGICGSCAMNINGSNTLACIC 97


>SPAP27G11.15 |slx1||structure-specific endonuclease catalytic
           subunit |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 271

 Score = 27.1 bits (57), Expect = 1.2
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = +2

Query: 320 GLCSRCQRTINWSQHLCLSCTTT 388
           G+C++C+R + W + L    TT+
Sbjct: 226 GMCTKCKRVLRWREFLSTVFTTS 248


>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1513

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
 Frame = +2

Query: 275  SLRSTRGCSWCNCR---TGLCSRCQRTINWSQHLCL 373
            ++R  +GC +C CR   +G+   C+    W    CL
Sbjct: 1089 TIRKKKGCIFCFCRLPESGVMIECEICHEWYHAKCL 1124


>SPCC24B10.17 |emp24||COPII-coated vesicle component Emp24
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 199

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +2

Query: 38  NMAYHMYCFYNSAL 79
           N   +MYCFYN AL
Sbjct: 87  NPGKYMYCFYNDAL 100


>SPAC9.13c |cwf16|SPAPJ735.01c|splicing factor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +1

Query: 136 LKRLLTETLGRQDGIKQEWLIEDTIGNWWRPNFEPPQY 249
           ++RL  ET   ++  K   L+ + +     PNF+PP+Y
Sbjct: 221 IRRLNAETTVEKELPKPIDLVSEKLATSNIPNFQPPKY 258


>SPAP32A8.02 |||xylose and arabinose reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 283

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = +1

Query: 304 VQLQDRALFAVPKNYKLVAAPLFELYDNAQGYGPIISS 417
           ++L D  L  + K   +  A L   +   +GY PII S
Sbjct: 202 IRLNDEKLVPIAKKLNISVAQLLIRWSLQKGYIPIIKS 239


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,832,179
Number of Sequences: 5004
Number of extensions: 35943
Number of successful extensions: 127
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 154448264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)