Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_N23
         (428 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S78459-1|AAB34403.1|   50|Apis mellifera mast cell-degranulating...    22   2.5  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   2.5  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    21   7.7  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    21   7.7  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    21   7.7  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   7.7  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    21   7.7  

>S78459-1|AAB34403.1|   50|Apis mellifera mast cell-degranulating
           peptide protein.
          Length = 50

 Score = 22.2 bits (45), Expect = 2.5
 Identities = 8/28 (28%), Positives = 15/28 (53%)
 Frame = -1

Query: 344 FFGTANRALSCNCTRNSLLCSLGFVMCG 261
           +F T   ++ CNC R+ +   +   +CG
Sbjct: 20  YFVTPTMSIKCNCKRHVIKPHICRKICG 47


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 22.2 bits (45), Expect = 2.5
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = +2

Query: 332 RCQRTINWSQHLCLSCTTTPRAMGRSY 412
           R + T  W ++  +    TP AMG  Y
Sbjct: 496 RAKTTRGWGEYTPVVYKKTPHAMGLDY 522


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 20.6 bits (41), Expect = 7.7
 Identities = 5/13 (38%), Positives = 10/13 (76%)
 Frame = +2

Query: 11  LWKVCYLCMNMAY 49
           ++ VC++C N+ Y
Sbjct: 411 VFPVCFVCFNLMY 423


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 20.6 bits (41), Expect = 7.7
 Identities = 5/13 (38%), Positives = 10/13 (76%)
 Frame = +2

Query: 11  LWKVCYLCMNMAY 49
           ++ VC++C N+ Y
Sbjct: 411 VFPVCFVCFNLMY 423


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 20.6 bits (41), Expect = 7.7
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -2

Query: 157 SLSVTSSNHQFHLLLDSILP 98
           S+S+  S H F LL+  I+P
Sbjct: 279 SISILISLHVFFLLVVEIIP 298


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 20.6 bits (41), Expect = 7.7
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -2

Query: 157 SLSVTSSNHQFHLLLDSILP 98
           S+S+  S H F LL+  I+P
Sbjct: 279 SISILISLHVFFLLVVEIIP 298


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 20.6 bits (41), Expect = 7.7
 Identities = 5/13 (38%), Positives = 10/13 (76%)
 Frame = +2

Query: 11  LWKVCYLCMNMAY 49
           ++ VC++C N+ Y
Sbjct: 349 VFPVCFVCFNLMY 361


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 128,694
Number of Sequences: 438
Number of extensions: 2815
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 11121030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)