Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0002_N22
(330 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0517 + 9054816-9055655 29 0.89
02_05_1001 + 33423562-33424098 27 2.7
01_05_0197 + 19143582-19143618,19143814-19144523 27 3.6
05_05_0039 - 21782093-21782320,21782383-21782754,21783031-217834... 27 4.7
05_01_0425 - 3347604-3347708,3348394-3348466,3349917-3350581,335... 27 4.7
01_06_0630 - 30723903-30724496 27 4.7
07_01_0501 - 3745447-3746244 26 6.2
11_06_0120 - 20324794-20325204,20325416-20325545,20326172-203262... 26 8.3
11_01_0259 + 1981554-1982249 26 8.3
05_06_0054 + 25231531-25231590,25232111-25232215 26 8.3
04_04_0236 + 23825368-23825763,23826229-23828667 26 8.3
01_06_1034 + 33962813-33963802 26 8.3
>03_02_0517 + 9054816-9055655
Length = 279
Score = 29.1 bits (62), Expect = 0.89
Identities = 13/45 (28%), Positives = 21/45 (46%)
Frame = +1
Query: 148 ENLKHVCCLRTWSLLFRSAPICCTNLPASKLTHIKWFHSMRIWTL 282
+++ H C+ W L S P+C LPA+ + + IW L
Sbjct: 154 KHVYHQDCILPWLSLRNSCPVCRRELPAAAAPESEADAGLTIWRL 198
>02_05_1001 + 33423562-33424098
Length = 178
Score = 27.5 bits (58), Expect = 2.7
Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Frame = -3
Query: 292 CARSMSKFSLSETILYVSA--WMPADLYSRWVQNERA 188
CA S E + + S W PAD+ + WV ERA
Sbjct: 80 CALVHSHGPYGENLFHGSGVGWAPADVVAAWVSRERA 116
>01_05_0197 + 19143582-19143618,19143814-19144523
Length = 248
Score = 27.1 bits (57), Expect = 3.6
Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 7/54 (12%)
Frame = +3
Query: 114 VLCYYDSKSYIRES-------QARMLPTDLEPALSFCTHLLYKSAGIQADTYKM 254
+ +YD KS IR+ + ++ D+E + F HL+ +S G+ D +K+
Sbjct: 132 ITSHYDGKSGIRKHILEMTHMENQLRSMDMEISDGFLVHLIMRSLGLNYDPFKI 185
>05_05_0039 -
21782093-21782320,21782383-21782754,21783031-21783496,
21784896-21784993,21785179-21785362,21785462-21785574,
21785942-21786127,21786191-21786364
Length = 606
Score = 26.6 bits (56), Expect = 4.7
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +1
Query: 175 RTWSLLFRSAPICCTNLPASKLTHIKWFHSMRIWTLIG 288
RTW+ +F + CC S I FH+ RIW+ +G
Sbjct: 170 RTWTYIFGA---CC-----STTVFIPSFHNYRIWSFLG 199
>05_01_0425 -
3347604-3347708,3348394-3348466,3349917-3350581,
3350609-3351088,3351253-3351534
Length = 534
Score = 26.6 bits (56), Expect = 4.7
Identities = 15/37 (40%), Positives = 17/37 (45%), Gaps = 6/37 (16%)
Frame = +1
Query: 31 RPWSPSPGYW------R*RLRLPTTQHHLVAKAKSSA 123
R WSPS G W R RLPTT+ H + A
Sbjct: 433 RAWSPSVGDWLADRPRTLRFRLPTTKDHTTERISGLA 469
>01_06_0630 - 30723903-30724496
Length = 197
Score = 26.6 bits (56), Expect = 4.7
Identities = 9/18 (50%), Positives = 10/18 (55%)
Frame = +1
Query: 160 HVCCLRTWSLLFRSAPIC 213
HVCCL W S P+C
Sbjct: 146 HVCCLDAWLRRNASCPVC 163
>07_01_0501 - 3745447-3746244
Length = 265
Score = 26.2 bits (55), Expect = 6.2
Identities = 16/49 (32%), Positives = 21/49 (42%)
Frame = +3
Query: 150 ESQARMLPTDLEPALSFCTHLLYKSAGIQADTYKMVSLNENLDIDRAHA 296
E+ R L E A H+L +AG+ D Y +S D DR A
Sbjct: 83 ETGVRALFDAAESAFGAGAHILVANAGLLDDRYPHLSNTPTADFDRTIA 131
>11_06_0120 -
20324794-20325204,20325416-20325545,20326172-20326255,
20326584-20326823,20327418-20327498,20327761-20328113
Length = 432
Score = 25.8 bits (54), Expect = 8.3
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = -1
Query: 255 PFYMCQLGCRQICTADGCRTKEQAPSP*AAYVLEI-L*YSSCCH 127
P ++C + CR IC CRTK+ AAY + L Y S H
Sbjct: 265 PDWICPV-CRGICNCSICRTKKGWFPTGAAYRKVVSLGYKSVAH 307
>11_01_0259 + 1981554-1982249
Length = 231
Score = 25.8 bits (54), Expect = 8.3
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +1
Query: 160 HVCCLRTWSLLFRSAPICCTNLPA 231
H C+ +W L+ R P+C LPA
Sbjct: 169 HEQCIFSWLLINRHCPLCRFPLPA 192
>05_06_0054 + 25231531-25231590,25232111-25232215
Length = 54
Score = 25.8 bits (54), Expect = 8.3
Identities = 10/35 (28%), Positives = 19/35 (54%)
Frame = +1
Query: 202 APICCTNLPASKLTHIKWFHSMRIWTLIGRTLIIE 306
A +CC+ + A+ + + IWTL+ +L I+
Sbjct: 18 AAVCCSTVAAAACATVPLNSCICIWTLLASSLAID 52
>04_04_0236 + 23825368-23825763,23826229-23828667
Length = 944
Score = 25.8 bits (54), Expect = 8.3
Identities = 11/38 (28%), Positives = 18/38 (47%)
Frame = +3
Query: 81 NHPASPSSQSKVLCYYDSKSYIRESQARMLPTDLEPAL 194
NHP +P ++C+ D + RE + T L P +
Sbjct: 276 NHPCNPEMVRFMMCFKDLPDWQREHRPFNAKTRLNPKI 313
>01_06_1034 + 33962813-33963802
Length = 329
Score = 25.8 bits (54), Expect = 8.3
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = +1
Query: 148 ENLKHVCCLRTWSLLFRSAPICCTNLPAS 234
++L H C+ W + S P+C LP+S
Sbjct: 211 KHLYHAECIIPWLVQHNSCPVCRHPLPSS 239
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,351,757
Number of Sequences: 37544
Number of extensions: 147605
Number of successful extensions: 415
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 413
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 415
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 447336660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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