Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_N19
         (394 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces p...    26   2.4  
SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66 |...    25   5.5  
SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces pombe...    24   7.3  
SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|c...    24   9.7  

>SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1272

 Score = 25.8 bits (54), Expect = 2.4
 Identities = 21/63 (33%), Positives = 30/63 (47%)
 Frame = -1

Query: 328 ILRYDRKCNRAIQQKNLDIKKV*SQDYYEDVDSDFINEFARGISLGEALAM*L*PCVVQY 149
           IL Y   C R +Q    D+ K+     Y+ +D DFI +F+R   L ++L          Y
Sbjct: 600 ILNYLNDCKR-LQ----DMDKLIPCIEYQSLDLDFITKFSRSKGLFDSLCYVSIYAFNDY 654

Query: 148 SIP 140
           SIP
Sbjct: 655 SIP 657


>SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 649

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = -1

Query: 322 RYDRKCNRAIQQKNLDIKKV*SQDYYEDVDSDFINEFARGISLG 191
           +Y +K N    +K  +I+     DY   VD  +++EF  G+ LG
Sbjct: 566 QYAKKENERWDKKIAEIELEQFHDYKPQVDIKYVDEF--GVELG 607


>SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 273

 Score = 24.2 bits (50), Expect = 7.3
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -2

Query: 147 VYRGVSMVRLLFIMYIWVR 91
           V+ G+S + LL  MY+W R
Sbjct: 51  VFFGISFLGLLATMYLWFR 69


>SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1111

 Score = 23.8 bits (49), Expect = 9.7
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -3

Query: 353 YFIICKLVHSEV*SKV 306
           Y+ IC L+HS+V  KV
Sbjct: 627 YYTICHLLHSDVYGKV 642


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,519,791
Number of Sequences: 5004
Number of extensions: 26663
Number of successful extensions: 41
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 130061696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)