Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_N19
         (394 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39993-3|AAK72060.1|  728|Caenorhabditis elegans Hypothetical pr...    28   2.7  
U80028-10|AAN73868.2|  376|Caenorhabditis elegans Serpentine rec...    27   6.3  

>U39993-3|AAK72060.1|  728|Caenorhabditis elegans Hypothetical
           protein F47E1.4 protein.
          Length = 728

 Score = 27.9 bits (59), Expect = 2.7
 Identities = 10/26 (38%), Positives = 17/26 (65%), Gaps = 2/26 (7%)
 Frame = -2

Query: 168 DH--VWFNIVYRGVSMVRLLFIMYIW 97
           DH  +W +++Y GV  + LL  +Y+W
Sbjct: 677 DHLRIWMHLLYVGVRFISLLSDIYVW 702


>U80028-10|AAN73868.2|  376|Caenorhabditis elegans Serpentine
           receptor, class w protein139 protein.
          Length = 376

 Score = 26.6 bits (56), Expect = 6.3
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -3

Query: 386 FTCILYTHNYKYFIICKLVHSE 321
           FT ILY +   +FIIC L+ S+
Sbjct: 316 FTVILYANFSSHFIICSLMSSQ 337


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,189,616
Number of Sequences: 27780
Number of extensions: 143134
Number of successful extensions: 205
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 205
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 598330768
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)