Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_N19
         (394 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    21   3.8  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   3.8  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    21   5.1  
DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.               20   8.8  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    20   8.8  

>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.4 bits (43), Expect = 3.8
 Identities = 5/9 (55%), Positives = 7/9 (77%)
 Frame = -2

Query: 180 LCSYDHVWF 154
           +C YDH W+
Sbjct: 158 VCEYDHTWW 166


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 3.8
 Identities = 8/26 (30%), Positives = 13/26 (50%)
 Frame = +2

Query: 41  DNRTKGTKNYTF*LRKHLTHIYIMKS 118
           DNR +  K + F    HL  +Y+  +
Sbjct: 851 DNRIRELKGFEFERLSHLRELYLQNN 876


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 21.0 bits (42), Expect = 5.1
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +3

Query: 165 GHSYIASASPSDMP 206
           GH Y A+ S  DMP
Sbjct: 63  GHHYGAAGSQQDMP 76


>DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.
          Length = 160

 Score = 20.2 bits (40), Expect = 8.8
 Identities = 8/18 (44%), Positives = 9/18 (50%)
 Frame = -3

Query: 371 YTHNYKYFIICKLVHSEV 318
           Y  NY  FI C L  S +
Sbjct: 71  YLTNYSCFITCALEKSHI 88


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 20.2 bits (40), Expect = 8.8
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = -2

Query: 129 MVRLLFIMYIWVRC 88
           M+R L +MY+ + C
Sbjct: 1   MIRWLLLMYLGITC 14


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 103,485
Number of Sequences: 438
Number of extensions: 1978
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9638226
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)