Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0002_N18
(630 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces pom... 27 1.7
SPAC5D6.05 |sep11|pmc6, med18|mediator complex subunit Pmc6 |Sch... 27 3.0
SPBC244.01c |sid4||SIN component scaffold protein Sid4 |Schizosa... 26 3.9
SPCC830.05c |epl1||histone acetyltransferase complex subunit Epl... 26 5.2
SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces... 25 6.8
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy... 25 6.8
SPAC139.02c |oac1||anion transporter|Schizosaccharomyces pombe|c... 25 6.8
SPBC16G5.01 |rpn12|mts3, SPBC342.07|19S proteasome regulatory su... 25 9.0
SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomy... 25 9.0
SPAC1639.01c ||SPAC806.09c|GNS1/SUR4 family protein|Schizosaccha... 25 9.0
SPAC869.04 |||formamidase-like protein|Schizosaccharomyces pombe... 25 9.0
>SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 992
Score = 27.5 bits (58), Expect = 1.7
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = +2
Query: 29 FMDFFLDGEFSTYGSDVVNFTEMEPEQRVDPMARVFPKVTKCTFHKYG 172
FM+ F +F+ Y VN T+ + + V A +FPK+ K F + G
Sbjct: 121 FMNAFTASDFTFYPFATVNTTDYKNLRDVYLDATLFPKLRKLDFLQEG 168
>SPAC5D6.05 |sep11|pmc6, med18|mediator complex subunit Pmc6
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 207
Score = 26.6 bits (56), Expect = 3.0
Identities = 10/37 (27%), Positives = 19/37 (51%)
Frame = -3
Query: 235 LVDDVQGQDAKPIELLHGTRWTVFVEGAFSHFRKDAC 125
L +++ D E T+W++++EG R+D C
Sbjct: 58 LCSNIESHDETDTEWSKNTQWSMYLEGNSEPKREDKC 94
>SPBC244.01c |sid4||SIN component scaffold protein Sid4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 660
Score = 26.2 bits (55), Expect = 3.9
Identities = 16/37 (43%), Positives = 20/37 (54%)
Frame = +2
Query: 374 PQEVEEVASKLQIGDWFVLYQLGKNIDPLIYNELMTD 484
P + +V +LQ G LYQ +NI LIY E M D
Sbjct: 603 PSTIGQVRRQLQQGRR--LYQWARNIHYLIYEENMRD 637
>SPCC830.05c |epl1||histone acetyltransferase complex subunit Epl1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 557
Score = 25.8 bits (54), Expect = 5.2
Identities = 19/77 (24%), Positives = 29/77 (37%), Gaps = 4/77 (5%)
Frame = +1
Query: 163 QIRSIGYRAKVRWALRPALEHRQRENLRVPLVLVHNPINTKWYFPAVPYGCGGRASCS-- 336
QI R + R + L+ + L P ++H +Y +PY G S
Sbjct: 368 QITQFQIRLQQRLTKKEQLDRNWVDLLETPSTVIHTNYPDSFYRNIIPYYSGKETKQSHN 427
Query: 337 --SIPAARPKPSGSSTG 381
SIP++ P S G
Sbjct: 428 QLSIPSSTPSTPLSDNG 444
>SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1441
Score = 25.4 bits (53), Expect = 6.8
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = +2
Query: 5 INVVGQIFFMDFFLDGE 55
++ GQ F++DF LDG+
Sbjct: 372 VHTSGQFFYLDFLLDGK 388
>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1583
Score = 25.4 bits (53), Expect = 6.8
Identities = 9/17 (52%), Positives = 15/17 (88%)
Frame = +3
Query: 369 LLHRKLKKLPVSCRSVI 419
+L ++LK+LPV+C S+I
Sbjct: 291 ILEKELKELPVACYSII 307
>SPAC139.02c |oac1||anion transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 320
Score = 25.4 bits (53), Expect = 6.8
Identities = 11/41 (26%), Positives = 17/41 (41%)
Frame = +1
Query: 235 ENLRVPLVLVHNPINTKWYFPAVPYGCGGRASCSSIPAARP 357
E + + HNP K P + GG A+C ++ P
Sbjct: 3 EKQTIKALPAHNPTQVKKLGPVSGFLSGGLAACGAVTLTNP 43
>SPBC16G5.01 |rpn12|mts3, SPBC342.07|19S proteasome regulatory
subunit Rpn12|Schizosaccharomyces pombe|chr 2|||Manual
Length = 270
Score = 25.0 bits (52), Expect = 9.0
Identities = 13/51 (25%), Positives = 23/51 (45%)
Frame = -1
Query: 189 CTVPDGPYLWKVHLVTLGKTRAIGSTRCSGSISVKLTTSLPYVENSPSRKK 37
C P+ Y K+ + + A + + I + TSL Y+EN+ +K
Sbjct: 155 CNFPEFSYFMKIVMSMVRNEIATCAEKVYSEIPLSNATSLLYLENTKETEK 205
>SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 411
Score = 25.0 bits (52), Expect = 9.0
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = -2
Query: 437 VGRGRTNHRSAAYWQLLQLPVEEPDG 360
V G+TNH + LQ +EEP G
Sbjct: 148 VDSGKTNHEEIHESRHLQTEIEEPSG 173
>SPAC1639.01c ||SPAC806.09c|GNS1/SUR4 family
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 328
Score = 25.0 bits (52), Expect = 9.0
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = +3
Query: 273 YQY*VVFPCCTVWLWWQGLVFVYTC 347
Y++ F C W Q LVF+Y C
Sbjct: 95 YKHGFFFSICNEKAWTQPLVFLYYC 119
>SPAC869.04 |||formamidase-like protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 410
Score = 25.0 bits (52), Expect = 9.0
Identities = 10/25 (40%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
Frame = +3
Query: 57 SPRTAVMLSTS-PRWSRSNA*TRWH 128
+PRT V + + P W + N RWH
Sbjct: 2 APRTIVKVDLNKPAWEQPNLHNRWH 26
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,615,318
Number of Sequences: 5004
Number of extensions: 52133
Number of successful extensions: 139
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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