Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0002_N18
(630 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1527 - 34167673-34168245 31 0.57
08_01_0539 + 4679392-4681282,4682060-4682104,4682403-4683560,468... 30 1.7
11_01_0406 - 3085239-3085301,3085485-3085700,3086332-3086406,308... 29 2.3
01_05_0339 + 21135250-21135467,21136465-21137513,21137905-21138962 29 4.0
02_05_0393 + 28571232-28572254 28 5.3
02_03_0224 - 16577234-16577494,16577798-16577996,16578069-165781... 28 5.3
08_01_0123 + 974941-975186,975274-977505 27 9.3
05_01_0278 + 2156126-2156128,2157677-2158069 27 9.3
03_05_0811 - 27867228-27867701,27868313-27868497,27869123-27869393 27 9.3
>04_04_1527 - 34167673-34168245
Length = 190
Score = 31.5 bits (68), Expect = 0.57
Identities = 17/47 (36%), Positives = 25/47 (53%)
Frame = +1
Query: 238 NLRVPLVLVHNPINTKWYFPAVPYGCGGRASCSSIPAARPKPSGSST 378
NLR PL + P+ + P+ Y G+A+ ++ P A P S SST
Sbjct: 60 NLRGPLARTNFPLVSSLPLPSPHYHLPGKAAAAAPPVAGPACSASST 106
>08_01_0539 +
4679392-4681282,4682060-4682104,4682403-4683560,
4683834-4684204,4684290-4684835,4684927-4685027,
4685117-4685933,4686025-4686213,4686313-4686384,
4686477-4686587,4686647-4686652,4686694-4686794,
4687714-4687813,4687891-4687986,4688157-4688273,
4688367-4688492,4688566-4688619,4688745-4688992,
4689087-4689195,4689284-4689583,4689799-4689963
Length = 2240
Score = 29.9 bits (64), Expect = 1.7
Identities = 17/38 (44%), Positives = 23/38 (60%)
Frame = +2
Query: 383 VEEVASKLQIGDWFVLYQLGKNIDPLIYNELMTDLAKK 496
VEE++ K +GDW+ L G P Y+EL +LAKK
Sbjct: 883 VEELSVK--VGDWYYLDGTGHERGPFSYSELQ-ELAKK 917
>11_01_0406 -
3085239-3085301,3085485-3085700,3086332-3086406,
3086488-3086529,3087104-3087166
Length = 152
Score = 29.5 bits (63), Expect = 2.3
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = -2
Query: 398 WQLLQLPVEEPDGFGRAAGIDE 333
WQ ++ VE DG GRAAG+++
Sbjct: 73 WQTQEMAVEVEDGGGRAAGVED 94
>01_05_0339 + 21135250-21135467,21136465-21137513,21137905-21138962
Length = 774
Score = 28.7 bits (61), Expect = 4.0
Identities = 24/65 (36%), Positives = 33/65 (50%)
Frame = +1
Query: 175 IGYRAKVRWALRPALEHRQRENLRVPLVLVHNPINTKWYFPAVPYGCGGRASCSSIPAAR 354
+GY V L+ + R +LR ++N + K PA P R+S SS PA+R
Sbjct: 634 VGYPITVE-VLKDSSSAASRNDLRPATSSLNNLL--KRSEPAEPRQA--RSSHSSRPASR 688
Query: 355 PKPSG 369
PKPSG
Sbjct: 689 PKPSG 693
>02_05_0393 + 28571232-28572254
Length = 340
Score = 28.3 bits (60), Expect = 5.3
Identities = 11/35 (31%), Positives = 16/35 (45%)
Frame = -2
Query: 440 LVGRGRTNHRSAAYWQLLQLPVEEPDGFGRAAGID 336
+ GR +H+S W + P+GFG G D
Sbjct: 193 VTGRDEAHHQSPGTWAYMSPEKLHPEGFGGGGGAD 227
>02_03_0224 -
16577234-16577494,16577798-16577996,16578069-16578139,
16578442-16578517,16578632-16578762,16578853-16578978,
16579075-16579248,16579414-16579484,16579752-16579923,
16581780-16581892,16582705-16582779,16582913-16583009,
16583448-16583534,16583535-16583589,16583650-16583828
Length = 628
Score = 28.3 bits (60), Expect = 5.3
Identities = 17/33 (51%), Positives = 19/33 (57%)
Frame = +3
Query: 312 LWWQGLVFVYTCCAPEAVWLLHRKLKKLPVSCR 410
+WWQ LV Y CC A WL +KL L VS R
Sbjct: 140 VWWQALVSQY-CCM-SATWL--KKLDILTVSRR 168
>08_01_0123 + 974941-975186,975274-977505
Length = 825
Score = 27.5 bits (58), Expect = 9.3
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +3
Query: 315 WWQGLVFVYTCCAPEAVWLLHRKLKKLPVSCRSVIG 422
WW F+ CC + LL KL +L +S ++IG
Sbjct: 185 WWSLSAFIVVCCTLHDLNLLSSKLGRLAMSA-ALIG 219
>05_01_0278 + 2156126-2156128,2157677-2158069
Length = 131
Score = 27.5 bits (58), Expect = 9.3
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
Frame = +2
Query: 167 YGPSGTVQKFDGLCVLPLNIVNEKIYVF---LWFW 262
YGP+G FDGL P + + + F LWFW
Sbjct: 8 YGPAGEAVGFDGLRE-PEVVAGDAVVAFKTALWFW 41
>03_05_0811 - 27867228-27867701,27868313-27868497,27869123-27869393
Length = 309
Score = 27.5 bits (58), Expect = 9.3
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -2
Query: 386 QLPVEEPDGFGRAAGIDEHEALPP 315
+LP++E DG+G +G D H PP
Sbjct: 188 ELPMKE-DGYGARSGSDPHRRAPP 210
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,074,937
Number of Sequences: 37544
Number of extensions: 380342
Number of successful extensions: 1147
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1147
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1537558360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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