Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0002_N16
(682 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 344 6e-96
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 203 2e-53
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 196 2e-51
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 146 3e-36
SPBC354.13 |rga6||GTPase activating protein Rga6|Schizosaccharom... 31 0.20
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 29 0.82
SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual 27 1.9
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 27 1.9
SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4 |Schi... 27 3.3
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 27 3.3
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi... 26 5.8
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 344 bits (846), Expect = 6e-96
Identities = 159/227 (70%), Positives = 183/227 (80%)
Frame = +1
Query: 1 VFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQGFQXXXXXXXXXXXXXXXX 180
++GQSGAGN WAKGHYTEGAEL D+VLDVVR+E+E+CD LQGFQ
Sbjct: 91 IYGQSGAGNIWAKGHYTEGAELADAVLDVVRREAEACDALQGFQLTHSLGGGTGSGMGTL 150
Query: 181 XXXKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDI 360
KIREEYPDR+M T+SV P+PK SDTVVEPYNATLS+HQLVEN+DET+CIDNEAL I
Sbjct: 151 LLSKIREEYPDRMMATFSVAPAPKSSDTVVEPYNATLSMHQLVENSDETFCIDNEALSSI 210
Query: 361 CFRTLKLSTPTYGDLNHLVSLTMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGF 540
TLK+ +P+Y DLNHLVS M+GVTT RFPG+LN+DLRKLAVNMVPFPRLHFFM GF
Sbjct: 211 FANTLKIKSPSYDDLNHLVSAVMAGVTTSFRFPGELNSDLRKLAVNMVPFPRLHFFMVGF 270
Query: 541 APLTSRGSRQYRALTVPELTQQMFDAXNMMAACDPRHGRYLTVAAIF 681
APL + GS ++A++VPELTQQMFDA NMM A DPRHGRYLTVAA+F
Sbjct: 271 APLAAIGSSSFQAVSVPELTQQMFDANNMMVAADPRHGRYLTVAALF 317
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 203 bits (495), Expect = 2e-53
Identities = 90/227 (39%), Positives = 137/227 (60%)
Frame = +1
Query: 1 VFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQGFQXXXXXXXXXXXXXXXX 180
V G+ A NN+A+GHYT G E++DSVL+ +R+ +++C LQGF
Sbjct: 97 VTGKEDASNNYARGHYTVGKEMIDSVLERIRRMADNCSGLQGFLVFHSFGGGTGSGLGAL 156
Query: 181 XXXKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDI 360
++ EY + +SV P+P+VS +VVEPYN+ L+ H ++N+D T+ +DNEA YDI
Sbjct: 157 LLERLNMEYGKKSNLQFSVYPAPQVSTSVVEPYNSVLTTHATLDNSDCTFMVDNEACYDI 216
Query: 361 CFRTLKLSTPTYGDLNHLVSLTMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGF 540
C R L + PTY +LN L++ +S +T LRF G LN DL + N+VP+PR+HF + +
Sbjct: 217 CRRNLDIERPTYENLNRLIAQVVSSITASLRFAGSLNVDLNEFQTNLVPYPRIHFPLVTY 276
Query: 541 APLTSRGSRQYRALTVPELTQQMFDAXNMMAACDPRHGRYLTVAAIF 681
+P+ S + + +V E+T Q F+ N M CDPR GRY+ ++
Sbjct: 277 SPIVSAAKAFHESNSVQEITNQCFEPYNQMVKCDPRTGRYMATCLLY 323
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 196 bits (478), Expect = 2e-51
Identities = 88/227 (38%), Positives = 133/227 (58%)
Frame = +1
Query: 1 VFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQGFQXXXXXXXXXXXXXXXX 180
+ G+ A NN+A+GHYT G ELVD V D +R+ +++C LQGF
Sbjct: 93 ITGKEDASNNYARGHYTVGKELVDEVTDKIRRIADNCSGLQGFLVFHSFGGGTGSGFGAL 152
Query: 181 XXXKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDI 360
++ EY + +SV P+P+VS +VVEPYN+ L+ H ++ D T+ +DNE+ YDI
Sbjct: 153 LLERLAMEYTKKSKLQFSVYPAPQVSTSVVEPYNSVLTTHATLDLADCTFMVDNESCYDI 212
Query: 361 CFRTLKLSTPTYGDLNHLVSLTMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGF 540
C R L + P+Y +LN L++ +S +T LRF G LN DL + N+VP+PR+HF + +
Sbjct: 213 CRRNLDIERPSYENLNRLIAQVVSSITASLRFEGSLNVDLAEFQTNLVPYPRIHFPLVTY 272
Query: 541 APLTSRGSRQYRALTVPELTQQMFDAXNMMAACDPRHGRYLTVAAIF 681
AP+ S + + +V E+T Q F+ N M CDPR GRY+ ++
Sbjct: 273 APIVSAAKAFHESNSVQEITNQCFEPYNQMVKCDPRAGRYMATCLLY 319
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 146 bits (353), Expect = 3e-36
Identities = 72/214 (33%), Positives = 115/214 (53%), Gaps = 4/214 (1%)
Frame = +1
Query: 16 GAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQGFQXXXXXXXXXXXXXXXXXXXKI 195
GAGNNWA G Y+ + + ++D++ +E++ D L+GF ++
Sbjct: 99 GAGNNWANG-YSHAERIFEDIMDMIDREADGSDSLEGFSLLHSIAGGTGSGLGSFLLERL 157
Query: 196 REEYPDRIMNTYSVVP-SPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRT 372
+ YP +I+ TYSV P S VSD VV+PYN+ L++ +L N D +DN AL I
Sbjct: 158 NDRYPKKIIQTYSVFPNSQSVSDVVVQPYNSLLALKRLTLNADSVVVLDNAALAHIAADR 217
Query: 373 LKLSTPTYGDLNHLVSLTMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLT 552
L PT+ N LVS MS TT LR+PG +N DL + +++P PR HF + + P T
Sbjct: 218 LHTQNPTFHQQNQLVSTVMSASTTTLRYPGYMNNDLVSIIASLIPSPRCHFLLTSYTPFT 277
Query: 553 SRGSRQYRAL---TVPELTQQMFDAXNMMAACDP 645
++ + +A+ TV ++ +++ N M + +P
Sbjct: 278 NQQVEEAKAIRKTTVLDVMRRLLLPKNQMVSVNP 311
>SPBC354.13 |rga6||GTPase activating protein
Rga6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 733
Score = 30.7 bits (66), Expect = 0.20
Identities = 29/87 (33%), Positives = 44/87 (50%), Gaps = 7/87 (8%)
Frame = +2
Query: 140 TLSE-AVPAPVWAHYLSQRSVKSTPTES*THTQSSP----RPKYQTPSSNPTMRLSQCTN 304
T+S+ AVP+ +A+ +S RSV S T+S T++SP K S T+ S TN
Sbjct: 643 TVSDTAVPSMSFANNISSRSVISAATDSKPSTRTSPPFVNNTKPIVAKSPVTVTASSETN 702
Query: 305 --S*KTQTKHTVSITRHSTIFASARSN 379
S K K + ++ + +F RSN
Sbjct: 703 KKSQKINKKASPRVSLWTKLFGKFRSN 729
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 28.7 bits (61), Expect = 0.82
Identities = 38/174 (21%), Positives = 58/174 (33%), Gaps = 5/174 (2%)
Frame = +2
Query: 20 PVTTGPRDTTQRALS*STQFLT*SEKNPNHVIVYKDSNSHTLSEAVPAPVWAHYL-SQRS 196
PVT+ P TT S S + + + N+ I + T L +
Sbjct: 485 PVTSTPLTTTNCTTSTSVPYTSTPVTSSNYTISSSTPVTSTPVTTTNCTTSTSVLYTSTP 544
Query: 197 VKSTPTES*THTQSSPRPKYQTPSSNPTMRLSQCTNS*KTQTKHTVSITRHSTIFAS--- 367
V STP + T S+ P TP ++ +S T T T T S ++ S
Sbjct: 545 VTSTPLATTNCTTSTSVPYTSTPVTSSNYTISSSTPVTSTPVTTTNCTTSTSVLYTSTPI 604
Query: 368 -ARSNYLHPPMEISITXXXXXXXXXXXXXXXXVSLMLIFVNLPSTWFPSPVSTS 526
+ ++ ++S S+ L N ST F S S S
Sbjct: 605 TSPNSTSSSSTQVSWNSTTPITGTSTSKVTSSTSIPLTSTNRTSTTFTSSTSIS 658
>SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 234
Score = 27.5 bits (58), Expect = 1.9
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +1
Query: 34 AKGHYTEGAELVDSVLDVVRKESESCDCLQ 123
A+GH G ELV + D +RK+SE+ L+
Sbjct: 183 AEGHPDVGVELVRAGADTLRKDSENHTALE 212
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 27.5 bits (58), Expect = 1.9
Identities = 33/148 (22%), Positives = 58/148 (39%), Gaps = 3/148 (2%)
Frame = +2
Query: 128 SNSHTLSEAVPAPVWAHYLSQRSVKSTPTES*THTQSSPRPKYQTPSSNPTMRLSQCTNS 307
SNS S VP+ V H S KS T T + SS + + T S+ TM + +++
Sbjct: 3672 SNSKVTSNKVPSTVSPHSSSISDTKSPATV--TISSSSGQFTHSTFSTGSTMH-NTVSHA 3728
Query: 308 *KTQTKHTVSITRHSTIFASARSNYLHPPMEISITXXXXXXXXXXXXXXXXVSLMLIFVN 487
T + T S +T+ ++ ++ + +SL L +
Sbjct: 3729 TSTSSSFTTSHLPTNTLASTFDNSQSIFSSSSGVPGLSTKSSSLGKIGSSSISLTLSSSS 3788
Query: 488 LPSTWFPSP---VSTSLCQDLPLSHRVA 562
+ P+P S SL + +P S ++
Sbjct: 3789 IRDAELPTPSRMTSPSLSETIPQSSSIS 3816
>SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 865
Score = 26.6 bits (56), Expect = 3.3
Identities = 22/68 (32%), Positives = 32/68 (47%)
Frame = +1
Query: 301 QLVENTDETYCIDNEALYDICFRTLKLSTPTYGDLNHLVSLTMSGVTTCLRFPGQLNADL 480
Q+ NTD + N LY RT+ DLN SL + GV +F G + +
Sbjct: 301 QVCTNTDSSRNAGNAILYQ-AVRTIL-------DLNSDSSLRVLGVNILAKFLGNRDNNT 352
Query: 481 RKLAVNMV 504
R +A+NM+
Sbjct: 353 RYVALNML 360
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 26.6 bits (56), Expect = 3.3
Identities = 19/91 (20%), Positives = 36/91 (39%)
Frame = +2
Query: 194 SVKSTPTES*THTQSSPRPKYQTPSSNPTMRLSQCTNS*KTQTKHTVSITRHSTIFASAR 373
S S+P+ S T T +SP + SS+ + S ++S + + + S + S+ +S+
Sbjct: 139 SSSSSPSSSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 198
Query: 374 SNYLHPPMEISITXXXXXXXXXXXXXXXXVS 466
S+ + IT S
Sbjct: 199 SSSSSSSSSVPITSSTSSSHSSSSSSSSSSS 229
>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 690
Score = 25.8 bits (54), Expect = 5.8
Identities = 14/40 (35%), Positives = 18/40 (45%)
Frame = +2
Query: 101 PNHVIVYKDSNSHTLSEAVPAPVWAHYLSQRSVKSTPTES 220
P VIV +DS S L+ +P P H L P+ S
Sbjct: 23 PQEVIVIEDSASPRLTPNLPPPFSVHQLQSFVPPQPPSSS 62
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,697,403
Number of Sequences: 5004
Number of extensions: 53581
Number of successful extensions: 207
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 202
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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