Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_N12
         (695 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC651.03c |gyp10||GTPase activating protein Gyp10|Schizosaccha...    27   2.6  
SPMIT.02 |||mitochondrial DNA binding endonuclease|Schizosacchar...    27   3.4  
SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces p...    26   4.5  

>SPBC651.03c |gyp10||GTPase activating protein
           Gyp10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 373

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 12/47 (25%), Positives = 27/47 (57%)
 Frame = +2

Query: 515 INVIKKLKYIYLFKVPISYVNEIKTFILLENKIDVIAILWDLNAVDI 655
           I+V+ +L   ++   P++ V      ++L+N+  +I +LWD +  D+
Sbjct: 206 ISVVCRLFDFFISSHPLTVVYTCAQ-VVLDNRTSIIELLWDNSGADL 251


>SPMIT.02 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 384

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 27/92 (29%), Positives = 40/92 (43%), Gaps = 7/92 (7%)
 Frame = +2

Query: 302 FT*SNQQGRNGFS*PKNKWSVRFPLHSRK*IYKLFFM*SRS-------EEVI*QQYLAKI 460
           F+ S Q+ +NG    KNKWS+ F L      Y++ +   R+       +E      + ++
Sbjct: 121 FSISKQKIKNG----KNKWSLTFKLTQNLYNYRILYFIKRNLGIGSLYKESSTNTVIYRL 176

Query: 461 RNSLFLKYTPAILSYLPLINVIKKLKYIYLFK 556
           R    LK    I    PL+   KK    YLFK
Sbjct: 177 RRREHLKKIIDIFDQFPLLT--KKYWDYYLFK 206


>SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 584

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 11/47 (23%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
 Frame = +2

Query: 515 INVIKKLKYIYLFKVPISYVNEIKTFILLENKID-VIAILWDLNAVD 652
           ++ + +++Y Y+F + +SY +E +T+   E+ +  ++   W+  A D
Sbjct: 6   LDYLLRIRYTYVFNLKVSYQSERRTYGATEHFVGCLVPKAWNCLADD 52


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,743,468
Number of Sequences: 5004
Number of extensions: 55324
Number of successful extensions: 79
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)