Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_N12
         (695 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF125462-4|AAD12859.1| 1219|Caenorhabditis elegans Heavy chain, ...    27   9.7  
AF125462-3|AAT68888.1| 1144|Caenorhabditis elegans Heavy chain, ...    27   9.7  
AF067609-5|AAC17534.1|  644|Caenorhabditis elegans Hypothetical ...    27   9.7  

>AF125462-4|AAD12859.1| 1219|Caenorhabditis elegans Heavy chain,
           unconventional myosinprotein 8, isoform a protein.
          Length = 1219

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = -3

Query: 270 FRKD*ASY-KSIAYLFNKQEVNMVIFRIQEFNYISY 166
           F +  A Y KS+A L N +E+  ++FR+ E +   Y
Sbjct: 853 FSRQIALYRKSVALLKNSKEIEKILFRLNEHSRAKY 888


>AF125462-3|AAT68888.1| 1144|Caenorhabditis elegans Heavy chain,
           unconventional myosinprotein 8, isoform b protein.
          Length = 1144

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = -3

Query: 270 FRKD*ASY-KSIAYLFNKQEVNMVIFRIQEFNYISY 166
           F +  A Y KS+A L N +E+  ++FR+ E +   Y
Sbjct: 853 FSRQIALYRKSVALLKNSKEIEKILFRLNEHSRAKY 888


>AF067609-5|AAC17534.1|  644|Caenorhabditis elegans Hypothetical
           protein C23H5.7 protein.
          Length = 644

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 15/36 (41%), Positives = 22/36 (61%)
 Frame = +1

Query: 118 ICQDMLFDRSCGVAYQVRYVVKFLNSKYYHIYLLFI 225
           IC+D+L D    + Y   + V F NSKYY+I+  F+
Sbjct: 24  ICKDILHDSFHRLLY---FYVPF-NSKYYYIWSFFV 55


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,666,189
Number of Sequences: 27780
Number of extensions: 294728
Number of successful extensions: 547
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 543
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 547
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)