Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_N07
         (753 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1 |Sc...    27   2.2  
SPBC16H5.02 |pfk1||6-phosphofructokinase |Schizosaccharomyces po...    26   5.0  
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p...    26   6.6  
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ...    25   8.8  
SPAC11D3.13 |||ThiJ domain protein|Schizosaccharomyces pombe|chr...    25   8.8  

>SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -2

Query: 488 VSLKFVHTLRLESVSYGHSLMQLQIAS 408
           VS +F H LRL+ V+  H +   +IAS
Sbjct: 291 VSTRFSHELRLKPVAVAHGIKNSEIAS 317


>SPBC16H5.02 |pfk1||6-phosphofructokinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 942

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +3

Query: 540 LGAVPRGAVPPRADRVLRDLQG 605
           LG V RG +P   DR+L  LQG
Sbjct: 476 LGHVQRGGIPCAYDRMLATLQG 497


>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 16/38 (42%), Positives = 19/38 (50%)
 Frame = +2

Query: 173 GAADVGGASPRGHLRVGAPRERHGRRAWTRDDSRRLRE 286
           G+  +G   PRGH   G+ R R  RR     D RR RE
Sbjct: 31  GSGGIGREDPRGH--YGSERPRRRRR--DESDFRRHRE 64


>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1502

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 7/23 (30%), Positives = 13/23 (56%)
 Frame = +1

Query: 370  CSAGRVCEINEHGEAICNCIKEC 438
            C+A R+C++ E       C+ +C
Sbjct: 974  CTASRICKVREIASLSLTCLLDC 996


>SPAC11D3.13 |||ThiJ domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 222

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 15/49 (30%), Positives = 22/49 (44%)
 Frame = +1

Query: 340 NLDDPCMKVHCSAGRVCEINEHGEAICNCIKECPYETDSRRKVCTNFNE 486
           NL     K++   G +  +  HG  I  CIK+    +  + K  T FNE
Sbjct: 105 NLHKGAAKIYSMGGVIAAVC-HGPVILPCIKDSTGFSIVKGKTVTAFNE 152


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,848,978
Number of Sequences: 5004
Number of extensions: 56630
Number of successful extensions: 180
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)