Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_N06
         (619 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1322.13 |ade6|min1|phosphoribosylaminoimidazole carboxylase ...    29   0.71 
SPAC1952.13 |ned1||lipin|Schizosaccharomyces pombe|chr 1|||Manual      27   1.6  
SPAC9G1.13c |||histone acetyltransferase complex subunit Swc4 |S...    27   2.9  
SPBC776.04 |sec2302|sec23-b|GTPase activating protein Sec23b |Sc...    25   6.6  
SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces pomb...    25   8.8  
SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharo...    25   8.8  

>SPCC1322.13 |ade6|min1|phosphoribosylaminoimidazole carboxylase
           Ade6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 552

 Score = 28.7 bits (61), Expect = 0.71
 Identities = 28/93 (30%), Positives = 41/93 (44%)
 Frame = -3

Query: 296 RGRRPVLAT*DVAGHAPPGS*SRLPFQDSLGDSTIRAASTLRNVHSLIRCTAIILTTNGI 117
           RG R ++A    A H P G  + +     +G       STL  V SL    +I+    G+
Sbjct: 439 RGLRVIIAGAGGAAHLP-GMVAAMTPLPVIGVPV--KGSTLDGVDSL---HSIVQMPRGV 492

Query: 116 PITWTKVENAVNVSVL*CRSCPLPSLNPSRSAA 18
           P+    + N+ N  +L CR   L +  PS  AA
Sbjct: 493 PVATVAINNSQNAGILACRI--LATFQPSLLAA 523


>SPAC1952.13 |ned1||lipin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 656

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 16/50 (32%), Positives = 20/50 (40%)
 Frame = -3

Query: 305 LWGRGRRPVLAT*DVAGHAPPGS*SRLPFQDSLGDSTIRAASTLRNVHSL 156
           LW           +V GH+PP S SR P       + +   S L   HSL
Sbjct: 268 LWFHASEDAKKFAEVYGHSPPASPSRTPASPKSDSALMDEDSDLSRRHSL 317


>SPAC9G1.13c |||histone acetyltransferase complex subunit Swc4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 411

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = +1

Query: 364 YIFRMCKKNDVVFFII 411
           Y+FR+CK  D+ FF+I
Sbjct: 109 YLFRLCKDYDLRFFVI 124


>SPBC776.04 |sec2302|sec23-b|GTPase activating protein Sec23b
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 765

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -1

Query: 613 IVHGTT*LKWENXSYDDGPLIMN 545
           I HG+T  +W N  Y + P  +N
Sbjct: 658 IFHGSTIAQWRNAGYQEQPEYVN 680


>SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 779

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +2

Query: 17  PPLIDLDLEKAVDTNDTIILKHS 85
           P   +LD + A+D+ND++ L HS
Sbjct: 416 PRFNELDSDMALDSNDSLPLDHS 438


>SPAC110.02 |pds5||cohesin-associated protein
           Pds5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1205

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 17/65 (26%), Positives = 25/65 (38%)
 Frame = -3

Query: 404 KKTTSFFLHILNIYIYEYIGAPCEMKQLYRV*CLWGRGRRPVLAT*DVAGHAPPGS*SRL 225
           K    + L I+N  I E    P     +     + G+G R  + + D   H P    +R 
Sbjct: 161 KNVEFYMLDIINQLINEINTIPAAALNILFAQLISGKGVRQTIGSSDSTNHGPAFQLARN 220

Query: 224 PFQDS 210
            F DS
Sbjct: 221 IFHDS 225


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,584,143
Number of Sequences: 5004
Number of extensions: 53083
Number of successful extensions: 168
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)