Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_N06
         (619 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0509 - 23554609-23555241,23555371-23556318                       28   5.2  
03_01_0520 - 3900387-3900613,3900812-3900853,3902092-3902210,390...    28   6.8  
08_02_0424 - 16957793-16958089,16958215-16958601,16958737-169597...    27   9.0  

>02_04_0509 - 23554609-23555241,23555371-23556318
          Length = 526

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 18/69 (26%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
 Frame = +1

Query: 64  HYNTETFTAFSTLVQVIGIPLVVNIIAVQRISEWT-LRSVDAARIVESPSES*NGSRDQE 240
           H     F  +  + + +    VV +++ +R+  +  +R  +AAR+V S + S + S    
Sbjct: 117 HREGVVFAPYGAMWRQLRKVCVVEMLSARRVRSFRRVREEEAARLVASIASSSSSSPTGH 176

Query: 241 PGGA*PATS 267
            GGA PA +
Sbjct: 177 DGGAAPAVN 185


>03_01_0520 -
           3900387-3900613,3900812-3900853,3902092-3902210,
           3903633-3903712,3903829-3903856,3904151-3904272,
           3904714-3904857,3904897-3906327
          Length = 730

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -1

Query: 223 HFRTHSVTQQYGRHQHYVTSTH 158
           HF+ H   QQY +HQH+  + H
Sbjct: 170 HFQHHRQQQQYQQHQHHNQNHH 191


>08_02_0424 -
           16957793-16958089,16958215-16958601,16958737-16959735,
           16959840-16959994,16960082-16960169,16960241-16960344,
           16960424-16960646,16960839-16960923,16961006-16961397,
           16962841-16963005
          Length = 964

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
 Frame = -3

Query: 557 SYNEWTEDRQTGHLM--VNGXRRLWTPGNP 474
           SY EW+E+R+   L+  +NG R L+ P  P
Sbjct: 470 SYREWSEERRQDWLLSELNGKRPLFGPDLP 499


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,761,845
Number of Sequences: 37544
Number of extensions: 377831
Number of successful extensions: 914
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 899
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 914
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)