Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_N06
         (619 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z47808-8|CAA87777.2| 1087|Caenorhabditis elegans Hypothetical pr...    37   0.010
Z79759-3|CAB02136.1|  225|Caenorhabditis elegans Hypothetical pr...    32   0.29 
AF047657-14|AAK18952.1|  331|Caenorhabditis elegans Serpentine r...    31   0.50 
U52002-3|AAL02476.1| 1306|Caenorhabditis elegans Cadherin family...    28   6.1  

>Z47808-8|CAA87777.2| 1087|Caenorhabditis elegans Hypothetical
           protein D2013.8a protein.
          Length = 1087

 Score = 37.1 bits (82), Expect = 0.010
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = +2

Query: 101 WSRLSVYHWSSILSQYNESVSGRYVVLMPPVLLSHRVSP 217
           W R +   W  +  +YN S++ RYV  +PP++++  V P
Sbjct: 591 WQRRTYKWWPPVAHEYNISLNSRYVTFLPPIVINAIVHP 629


>Z79759-3|CAB02136.1|  225|Caenorhabditis elegans Hypothetical
           protein ZK858.3 protein.
          Length = 225

 Score = 32.3 bits (70), Expect = 0.29
 Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +2

Query: 8   LVFPPLIDLDLEKAVD-TNDTIILKHSPHSRPWSRLSVYHW 127
           L+  PLI +      D TN+T +L HS   +P  RL+ Y+W
Sbjct: 7   LIIVPLIIIGGGVVADNTNETPVLAHSSDEQPHQRLTYYNW 47


>AF047657-14|AAK18952.1|  331|Caenorhabditis elegans Serpentine
           receptor, class h protein127 protein.
          Length = 331

 Score = 31.5 bits (68), Expect = 0.50
 Identities = 15/30 (50%), Positives = 20/30 (66%), Gaps = 3/30 (10%)
 Frame = +2

Query: 68  IILKHSPH---SRPWSRLSVYHWSSILSQY 148
           +I+ H+PH   S  WS LS++ WSSIL  Y
Sbjct: 44  VIIFHTPHGMASVKWSLLSLHVWSSILDVY 73


>U52002-3|AAL02476.1| 1306|Caenorhabditis elegans Cadherin family
            protein 5, isoformb protein.
          Length = 1306

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -1

Query: 307  VYGVEGGGQCLPPETWRVTLLLVPDPGCHFRTH 209
            +Y +   G+ L P T R+  +++P P  H RTH
Sbjct: 1267 MYAINPSGR-LDPITKRIQTIVIPTPDYHQRTH 1298


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,532,007
Number of Sequences: 27780
Number of extensions: 309001
Number of successful extensions: 725
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 697
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 725
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1342816466
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)