Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_N05
         (586 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H1.04c |mdm31||mitochondrial inner membrane protein Mdm31|S...    27   2.0  
SPBC428.01c |nup107|SPBC582.11c|nucleoporin Nup107|Schizosacchar...    26   3.5  
SPCC23B6.02c |||sequence orphan|Schizosaccharomyces pombe|chr 3|...    25   8.1  

>SPAC3H1.04c |mdm31||mitochondrial inner membrane protein
           Mdm31|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 9/34 (26%), Positives = 18/34 (52%)
 Frame = -3

Query: 290 IYIYFTEEPTKKLSWTYYTLKNRRPLINALNSDM 189
           + ++F E P  +  W +Y L N + L  + ++ M
Sbjct: 345 VSVFFCELPRLRKQWLFYDLMNAKTLTGSFDNSM 378


>SPBC428.01c |nup107|SPBC582.11c|nucleoporin
           Nup107|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 794

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +1

Query: 424 FFYTLFLLYNGGCFQRKNKINYLTVNFWKN 513
           FF+T F L+  G F+   ++   T N W++
Sbjct: 232 FFHTAFCLFRSGSFEELLELCRRTGNHWRS 261


>SPCC23B6.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 139

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = +3

Query: 255 FFGWFLCKIY 284
           FF WFLCK++
Sbjct: 128 FFSWFLCKLF 137


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,041,238
Number of Sequences: 5004
Number of extensions: 35983
Number of successful extensions: 94
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)