Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_N05
         (586 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0248 + 16042870-16043207,16043288-16043491,16043630-160436...    29   2.7  
12_01_0065 - 558521-558675,558765-558835,558914-558998,559366-55...    27   8.3  

>09_04_0248 +
           16042870-16043207,16043288-16043491,16043630-16043687,
           16043806-16043868,16044282-16044332,16044811-16044838,
           16045251-16045366,16045463-16045552,16045638-16045769,
           16046071-16046223
          Length = 410

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 17/55 (30%), Positives = 27/55 (49%)
 Frame = +1

Query: 40  SAFYAPKPSEHQDVFDVQTTTANEAQKTAQKASSMLIDNLLNIRNQDPCCISEFK 204
           SAF +PK    + +FD+         + A  + S  +D L ++ NQ    +SEFK
Sbjct: 241 SAFRSPKGDAWKALFDLAGGLIQVYDQEAMLSLSKFVDQLPSVMNQVTEGVSEFK 295


>12_01_0065 -
           558521-558675,558765-558835,558914-558998,559366-559484,
           559570-559718,560116-560157,560413-560484,560788-560897,
           561446-561535,561633-561747
          Length = 335

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = +1

Query: 64  SEHQDVFDVQTTTANEAQKTAQKASSMLIDNLLNIRNQDPCCISE 198
           SE  DV+D+ T T  +   T +  SS     LL + N D  C  +
Sbjct: 231 SEDSDVYDIYTVTEVDDDTTMEGTSSAPYP-LLQVDNDDDVCYDD 274


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,895,290
Number of Sequences: 37544
Number of extensions: 186327
Number of successful extensions: 408
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 405
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 408
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1376330256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)