Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_N05
         (586 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41105-4|AAA82397.2|  407|Caenorhabditis elegans 3-ketoacyl-coa ...    28   4.2  
U23484-13|AAC46774.1|  399|Caenorhabditis elegans Hypothetical p...    28   5.6  
Z93381-3|CAB07606.1|  362|Caenorhabditis elegans Hypothetical pr...    27   9.8  
Z83119-5|CAB05582.3| 1364|Caenorhabditis elegans Hypothetical pr...    27   9.8  
Z81524-4|CAB04250.1|  528|Caenorhabditis elegans Hypothetical pr...    27   9.8  
Z79756-6|CAB02117.3|  693|Caenorhabditis elegans Hypothetical pr...    27   9.8  

>U41105-4|AAA82397.2|  407|Caenorhabditis elegans 3-ketoacyl-coa
           thiolase protein 1 protein.
          Length = 407

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = +1

Query: 52  APKPSEHQDVFDVQTTTANEAQKTAQKAS-SMLIDNLLNIRNQDPCCISEFKALI 213
           A KPS  Q+VF  Q   AN  Q  A++A+    +D  + +   +  C S  KA+I
Sbjct: 62  AVKPSSIQEVFLGQVCQANAGQAPARQAALGAGLDLSVAVTTVNKVCSSGLKAII 116


>U23484-13|AAC46774.1|  399|Caenorhabditis elegans Hypothetical
           protein EEED8.14 protein.
          Length = 399

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = +1

Query: 55  PKPSEHQDVFDVQTTTANEAQKTAQKASSMLIDNLLNIRNQ 177
           P+ +EH  + D +    +E Q   +K   +L ++L+NI+ Q
Sbjct: 34  PRCTEHFSLLDRKVEIISEVQAIQEKKIGLLNESLMNIQKQ 74


>Z93381-3|CAB07606.1|  362|Caenorhabditis elegans Hypothetical
           protein F28G4.3 protein.
          Length = 362

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = -1

Query: 166 CSTNYLLTLMRLFGRFSALRSPSSSVHRKRPGVR 65
           CS ++L+  + L   +S +RSP+S  H +R  VR
Sbjct: 10  CSISFLICTVILIAEYSRVRSPTSP-HSQRSPVR 42


>Z83119-5|CAB05582.3| 1364|Caenorhabditis elegans Hypothetical
           protein R05H10.6 protein.
          Length = 1364

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 10/28 (35%), Positives = 20/28 (71%)
 Frame = -1

Query: 187 NKDLDYECSTNYLLTLMRLFGRFSALRS 104
           +K+ D+E   +YLLTL  + G+++++ S
Sbjct: 892 SKEFDFEKQKSYLLTLKLVAGKYNSVES 919


>Z81524-4|CAB04250.1|  528|Caenorhabditis elegans Hypothetical
           protein F32H5.4 protein.
          Length = 528

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = -2

Query: 270 GTNQKIILDLLHPKESKTLNQCLKF-RYATRIL 175
           G NQ+  + LL PKE KTL+  +K  +Y   IL
Sbjct: 10  GPNQENEVQLLPPKEEKTLDNFMKLGKYCWLIL 42


>Z79756-6|CAB02117.3|  693|Caenorhabditis elegans Hypothetical
           protein F53C11.2 protein.
          Length = 693

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = -2

Query: 258 KIILDLLHPKESKTLNQCLKFRYATRILITNVQQIIY 148
           K+ +D L  + +K    CLKFR  T I +T+VQ  ++
Sbjct: 50  KLFIDSLK-EIAKVTADCLKFRNCTLIELTSVQDNVF 85


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,246,739
Number of Sequences: 27780
Number of extensions: 199311
Number of successful extensions: 587
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 566
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 585
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1226509528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)