Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_N03
         (688 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0129 + 18431820-18432224                                         31   0.65 
01_01_0056 + 422141-422379,422524-422620,422697-422774,422871-42...    29   3.5  
11_06_0648 + 25873779-25874279,25874418-25875548                       28   6.0  
11_01_0374 - 2843405-2843508,2844134-2844239,2844327-2844409,284...    28   6.0  

>01_05_0129 + 18431820-18432224
          Length = 134

 Score = 31.5 bits (68), Expect = 0.65
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +3

Query: 426 RRRSRPEICPPFPIYHQPTLLVVVSNICSRT 518
           RRR RP   PP P  H P   V+V+   +RT
Sbjct: 4   RRRQRPSSSPPLPPEHSPLPSVIVATARART 34


>01_01_0056 +
           422141-422379,422524-422620,422697-422774,422871-422930,
           423019-423123,423743-423856,424145-424186,424380-424496,
           424568-424755,425502-425785,425869-425990,426118-426160,
           426265-426356,427331-427379,427623-427693,427793-427912,
           428586-428674,429266-429311,429926-429973
          Length = 667

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -3

Query: 440 SRTPSRINHGRCYETGSLYQQQTI 369
           SRTPS ++H   +E+G    QQTI
Sbjct: 16  SRTPSALHHNGAFESGEPSMQQTI 39


>11_06_0648 + 25873779-25874279,25874418-25875548
          Length = 543

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 16/44 (36%), Positives = 25/44 (56%)
 Frame = +3

Query: 135 VPGCAGKRVNLQLILMEPQVLWSRYR*LETKITSSVLLAPLISL 266
           V  C  K    QL++   Q    R+R ++++I S +LL P+ISL
Sbjct: 88  VLSCQDKSAVYQLVMARRQA--DRFRDVQSRIDSYLLLVPVISL 129


>11_01_0374 - 2843405-2843508,2844134-2844239,2844327-2844409,
            2844886-2845078,2845527-2845662,2846185-2846264,
            2846348-2846932,2847058-2847126,2847203-2847347,
            2847442-2847542,2848208-2849066,2849397-2849536,
            2849606-2849783,2849885-2850287,2850770-2850833,
            2851223-2851278,2851470-2851572
          Length = 1134

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = -1

Query: 682  WVPRGLHEGRIELVPAGSEVKRRGWSLE*VQFAAQXIVILVKEISV 545
            W P  +    + LV    ++KRRGW  + V + ++ I+ LV E ++
Sbjct: 902  WTPTNVSVHLLNLVDKVFQLKRRGWIRKQVLWISKQILQLVMEDAI 947


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,521,799
Number of Sequences: 37544
Number of extensions: 415874
Number of successful extensions: 996
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 970
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 996
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)