Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_N02
         (553 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC162.01c |||RNA-binding protein |Schizosaccharomyces pombe|ch...    30   0.20 
SPBC1861.01c |cnp3|SPBC56F2.13|CENP-C|Schizosaccharomyces pombe|...    27   2.4  
SPCC126.15c |sec65||signal recognition particle subunit Sec65 |S...    27   2.4  
SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   2.4  
SPAC31G5.02 |||conserved fungal protein|Schizosaccharomyces pomb...    26   4.2  
SPBC1652.02 |aap1|SPBC16A3.20c|APC amino acid transporter|Schizo...    26   4.2  
SPBC1683.08 |ght4||hexose transporter Ght4 |Schizosaccharomyces ...    25   9.8  
SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid aminotr...    25   9.8  
SPBC16A3.01 |spn3|SPBC543.01c|septin Spn3|Schizosaccharomyces po...    25   9.8  

>SPCC162.01c |||RNA-binding protein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 244

 Score = 30.3 bits (65), Expect = 0.20
 Identities = 17/58 (29%), Positives = 26/58 (44%)
 Frame = +3

Query: 255 YSRERSKEMLYRGRIRVQLKNDDGTPVKPEFPTRESVMKYVGESIPKLKTRQNRPAEQ 428
           + RER +E  Y GR   + + D  +P  PE    E   ++     P  K  + RP +Q
Sbjct: 94  HGRERFRERDYEGRRDRKERRDGVSPFSPEGEGLERKREHEKLQAPSPKEEEERPVDQ 151


>SPBC1861.01c |cnp3|SPBC56F2.13|CENP-C|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 643

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 18/56 (32%), Positives = 27/56 (48%)
 Frame = +3

Query: 279 MLYRGRIRVQLKNDDGTPVKPEFPTRESVMKYVGESIPKLKTRQNRPAEQQPQAAN 446
           ML R       KN   TP KP   +  + +K  GES P +K ++ RP + + +  N
Sbjct: 294 MLNRSLANNSQKNKKRTPNKPLQESSINSVKE-GESNPVVKRKRGRPRKNKLEIGN 348


>SPCC126.15c |sec65||signal recognition particle subunit Sec65
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 199

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = +3

Query: 102 ICIYPAYLNSKKTLAQGRKLPKSYCIENPTHQEIRDVLLATGLQVGVE 245
           I +YP Y +  +   + R +PK   I NP  + I DV+   G +  +E
Sbjct: 4   IILYPIYFDKSRP-RRFRCVPKDKAILNPLAKNIADVVRDLGYKCKLE 50


>SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 551

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = +3

Query: 288 RGRIRVQLKNDDGTPVKPEFPTRESVMKYVGESIPKLKTR-QNRPAE 425
           R R+   LKN D    K E    E   K + +S PK +TR +N P+E
Sbjct: 42  RDRLHKSLKNFDSVKRKVEIANDEGNNKLL-KSSPKAQTRDENTPSE 87


>SPAC31G5.02 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 232

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +3

Query: 285 YRGRIRVQLKNDDGTPVKPEF 347
           Y GR +++L   DGTP +P F
Sbjct: 152 YHGRYKLELYEWDGTPKQPMF 172


>SPBC1652.02 |aap1|SPBC16A3.20c|APC amino acid
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 594

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = +3

Query: 186 PTHQEIRDVLLATGLQVGVENKLYSRERS-KEMLYRGRIRVQLKNDD 323
           PT Q ++DV L TG    V +++Y  E S  E+  +   +  L+++D
Sbjct: 521 PTFQSLKDVDLTTGRYDLVNSQMYVAESSTSELSEKDLTKPNLQSND 567


>SPBC1683.08 |ght4||hexose transporter Ght4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 557

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 17/58 (29%), Positives = 21/58 (36%)
 Frame = +3

Query: 261 RERSKEMLYRGRIRVQLKNDDGTPVKPEFPTRESVMKYVGESIPKLKTRQNRPAEQQP 434
           RER K   YRG+    ++N DG        + ES       S      R N   E  P
Sbjct: 497 REREKSKGYRGQEERFIENADGADNDDSSASSESFASAGAHSRSVFPRRSNVSEESHP 554


>SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid
           aminotransferase Eca39|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 380

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 4/30 (13%)
 Frame = -3

Query: 422 GWSVLSCLQFG----Y*LSNIFHYGFSSWK 345
           GWS    + FG    +  S++FHYGF  ++
Sbjct: 55  GWSTPEIVPFGKLCFHPASSVFHYGFECFE 84


>SPBC16A3.01 |spn3|SPBC543.01c|septin Spn3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 412

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +1

Query: 145 LKDENYLNLTVLKTPH 192
           L+D   +NLTVL TPH
Sbjct: 106 LEDGTKINLTVLDTPH 121


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,200,542
Number of Sequences: 5004
Number of extensions: 45221
Number of successful extensions: 112
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)