Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_N02
         (553 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0255 - 13522303-13522337,13524027-13524126,13524247-135244...    72   4e-13
05_06_0148 + 25989595-25990956                                         29   3.3  
05_02_0159 - 7186908-7187606                                           28   4.3  
12_02_1131 - 26358339-26360609                                         28   5.7  
05_07_0188 - 28269657-28270034,28270113-28270253,28270334-282705...    27   7.5  
04_04_1466 - 33799104-33799229,33799659-33799669,33800052-338002...    27   7.5  
12_01_0647 - 5485100-5487028                                           27   10.0 
05_06_0147 + 25986259-25987701                                         27   10.0 

>06_02_0255 -
           13522303-13522337,13524027-13524126,13524247-13524468,
           13524608-13524695,13525507-13525562
          Length = 166

 Score = 71.7 bits (168), Expect = 4e-13
 Identities = 37/94 (39%), Positives = 53/94 (56%), Gaps = 1/94 (1%)
 Frame = +3

Query: 84  TDVERWICIYPAYLNSKKTLAQGRKLPKSYCIENPTHQEIRDVLLATGLQVGVE-NKLYS 260
           + +++W  IYP YLNSKKT+A+GR++       +PT  EI D      +   +E +K Y 
Sbjct: 69  SSIKKWNVIYPVYLNSKKTVAEGRRIASGKACPDPTCVEIADCCSHLKIPHAIELDKAYP 128

Query: 261 RERSKEMLYRGRIRVQLKNDDGTPVKPEFPTRES 362
           R    +    GR+RVQLK DDG+PV P   T  +
Sbjct: 129 R----DFFQVGRVRVQLKKDDGSPVNPAIKTNST 158


>05_06_0148 + 25989595-25990956
          Length = 453

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 14/55 (25%), Positives = 26/55 (47%)
 Frame = +3

Query: 174 CIENPTHQEIRDVLLATGLQVGVENKLYSRERSKEMLYRGRIRVQLKNDDGTPVK 338
           C      Q +  VL+  G+Q+GV    Y  E  K      ++R+ + +D+G  ++
Sbjct: 364 CWPQYAEQRLNKVLVVDGMQLGVVMDGYDEELVKAEEVEKKVRLVMDSDEGKKLR 418


>05_02_0159 - 7186908-7187606
          Length = 232

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 20/69 (28%), Positives = 33/69 (47%)
 Frame = +3

Query: 237 GVENKLYSRERSKEMLYRGRIRVQLKNDDGTPVKPEFPTRESVMKYVGESIPKLKTRQNR 416
           GV   L    R +E+L R ++R       G  V PE  +   + K   +S+P+L+ R   
Sbjct: 75  GVAAALGPAARLRELLLR-KLRKPKAAGGGGAVSPEGQSGRFLAKVRADSMPRLEARAIA 133

Query: 417 PAEQQPQAA 443
             E++ +AA
Sbjct: 134 GGEEERRAA 142


>12_02_1131 - 26358339-26360609
          Length = 756

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 9/20 (45%), Positives = 17/20 (85%)
 Frame = +3

Query: 84  TDVERWICIYPAYLNSKKTL 143
           T++   +C+YPAYL+S+++L
Sbjct: 264 TELAGCLCVYPAYLSSERSL 283


>05_07_0188 -
           28269657-28270034,28270113-28270253,28270334-28270570,
           28270733-28271179,28273978-28274274
          Length = 499

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 24/94 (25%), Positives = 38/94 (40%)
 Frame = +3

Query: 111 YPAYLNSKKTLAQGRKLPKSYCIENPTHQEIRDVLLATGLQVGVENKLYSRERSKEMLYR 290
           +P  L S  T    R +  + C  +PT     DV+  TGLQV +E+K         + + 
Sbjct: 222 FPCELLSSGTGDSLRYIYLASCNFHPTRLSYLDVMTCTGLQV-IESK---APNLSSIRFE 277

Query: 291 GRIRVQLKNDDGTPVKPEFPTRESVMKYVGESIP 392
           G + VQL   +   +K  +        Y    +P
Sbjct: 278 GDLYVQLSLGEPLQIKQLYRLCNDAAFYARTELP 311


>04_04_1466 -
           33799104-33799229,33799659-33799669,33800052-33800200,
           33800261-33800299,33800690-33800746,33800839-33801628,
           33801705-33801980,33802051-33802117,33802211-33802285,
           33802618-33802812,33802927-33803076,33803152-33803522,
           33804070-33804193,33804246-33804275,33804306-33804417,
           33804919-33804985,33805138-33805180,33805768-33805872
          Length = 928

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
 Frame = +3

Query: 297 IRVQLKNDDGTPVKPEFPTRESVMK--YVGESIPKLKTRQNRPAE 425
           I  ++ N+D    +P  PTR S +K   +GES PK+  +   PA+
Sbjct: 433 IATKVLNEDDPSAEPNEPTRVSSVKGPGLGESKPKVSAKVVVPAK 477


>12_01_0647 - 5485100-5487028
          Length = 642

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 17/53 (32%), Positives = 24/53 (45%)
 Frame = +3

Query: 222 TGLQVGVENKLYSRERSKEMLYRGRIRVQLKNDDGTPVKPEFPTRESVMKYVG 380
           TG    V NK++ R++  EM+ +  I   L  +  T V    P    VM  VG
Sbjct: 174 TGFTPEVPNKMFGRDKEMEMIVQWLIN-PLDGNAETQVSSTNPMHVPVMSLVG 225


>05_06_0147 + 25986259-25987701
          Length = 480

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 14/55 (25%), Positives = 26/55 (47%)
 Frame = +3

Query: 174 CIENPTHQEIRDVLLATGLQVGVENKLYSRERSKEMLYRGRIRVQLKNDDGTPVK 338
           C      Q +  VLL  G+Q+GV    Y  E  K      ++R+ ++ ++G  ++
Sbjct: 385 CWPQYAEQRMNKVLLVDGMQLGVVMDGYDEELVKAEEVEKKVRLVMEFEEGKKLR 439


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,723,536
Number of Sequences: 37544
Number of extensions: 241393
Number of successful extensions: 606
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 597
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 605
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1245816180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)