Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_N02
         (553 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067212-1|AAC16997.3|  160|Caenorhabditis elegans Hypothetical ...   113   6e-26
AF067611-2|AAW88406.1| 2302|Caenorhabditis elegans Cadherin fami...    34   0.078
Z81489-4|CAB04010.1|  361|Caenorhabditis elegans Hypothetical pr...    31   0.73 
Z82266-9|CAB05186.1|  276|Caenorhabditis elegans Hypothetical pr...    27   6.8  
Z71181-5|CAA94898.1|  355|Caenorhabditis elegans Hypothetical pr...    27   6.8  

>AF067212-1|AAC16997.3|  160|Caenorhabditis elegans Hypothetical
           protein F37F2.2 protein.
          Length = 160

 Score =  113 bits (273), Expect = 6e-26
 Identities = 60/119 (50%), Positives = 75/119 (63%), Gaps = 1/119 (0%)
 Frame = +3

Query: 93  ERWICIYPAYLNSKKTLAQGRKLPKSYCIENPTHQEIRDVLLATGLQVGVE-NKLYSRER 269
           +RWI IYPAY++ KKT  QGRK+ +   +ENPT  EI DVL A G    +E  K Y R+ 
Sbjct: 13  KRWIVIYPAYIDKKKTAKQGRKISQILAVENPTSVEIHDVLAAVGFNPLLERTKCYPRDG 72

Query: 270 SKEMLYRGRIRVQLKNDDGTPVKPEFPTRESVMKYVGESIPKLKTRQNRPAEQQPQAAN 446
            ++   +GR+RVQLKNDDGT  K E  TR+ + K V E IPKLKTRQ  P    P  A+
Sbjct: 73  ERDFEVQGRVRVQLKNDDGT-AKHEQKTRDEIFKMVAEMIPKLKTRQ--PGYTAPSVAS 128


>AF067611-2|AAW88406.1| 2302|Caenorhabditis elegans Cadherin family
            protein 10 protein.
          Length = 2302

 Score = 33.9 bits (74), Expect = 0.078
 Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
 Frame = +3

Query: 54   ITSWNPEKKHTDVERWICIYPAYLNSKKTLAQGRKLPKSYCIENPT-HQEIRDVLLATGL 230
            +T  NP+ +  ++   +   P YL +++ LAQ    P  +  ENP  H E+R+  LA G 
Sbjct: 871  MTLKNPDSQKINILVRLISSPEYLKNQEKLAQRPIYPMPWTRENPVIHVELREE-LAQGQ 929

Query: 231  QVGVENKLYSRERSKEMLYRG 293
             VGV   +     S+E+   G
Sbjct: 930  VVGVFPAVSQGNLSREIQISG 950


>Z81489-4|CAB04010.1|  361|Caenorhabditis elegans Hypothetical
           protein C55A1.5 protein.
          Length = 361

 Score = 30.7 bits (66), Expect = 0.73
 Identities = 17/52 (32%), Positives = 28/52 (53%)
 Frame = -2

Query: 534 FIGIFEINLL*NIYYFLIDVLFYSSYY*TGLLLEVVVRLVCFVLSSIWVLTL 379
           F  + E+ L  N++ F     FYS+    GL +E+V  L+ F  +SI+  T+
Sbjct: 67  FFSVVELTLYPNVHSFYAGYFFYSTQRPFGLKIEIVQVLMAF-YTSIYASTI 117


>Z82266-9|CAB05186.1|  276|Caenorhabditis elegans Hypothetical
           protein F23B2.7 protein.
          Length = 276

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +3

Query: 237 GVENKLYSRERSKEMLYRGRIRVQLKNDDGTPVKPEFPTRE 359
           G   K YS+++SK+       + Q  N +G P+KP  P R+
Sbjct: 102 GKNGKAYSKKKSKKTKSE---KSQSSNKEGAPMKPMDPIRD 139


>Z71181-5|CAA94898.1|  355|Caenorhabditis elegans Hypothetical
           protein K07C5.5 protein.
          Length = 355

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = +2

Query: 17  LIVFLFIDYGYSYYF-MESRKETHRC*KMDM 106
           L+V  F ++ YS+ F +E  K THRC  +DM
Sbjct: 80  LMVHGFPEFWYSWRFQLEHFKHTHRCIAIDM 110


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,840,644
Number of Sequences: 27780
Number of extensions: 244150
Number of successful extensions: 637
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 617
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 634
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1123720628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)