Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0002_M23
(503 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein Mfr1|Schizosa... 36 0.003
SPCC1235.09 |||histone deacetylase complex subunit|Schizosacchar... 36 0.005
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch... 34 0.014
SPBC646.05c |erg9||squalene synthase Erg9|Schizosaccharomyces po... 32 0.056
SPCC613.12c |raf1|dos1, cmc1, clr8|Rik1-associated factor Raf1|S... 31 0.074
SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces pombe... 29 0.30
SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein Pop1... 28 0.92
SPCC191.11 |inv1||beta-fructofuranosidase|Schizosaccharomyces po... 27 2.1
SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces p... 27 2.1
SPBC713.04c |||U3 snoRNP-associated protein Utp1|Schizosaccharom... 27 2.1
SPAC4H3.05 |srs2||ATP-dependent DNA helicase, UvrD subfamily|Sch... 26 2.8
SPBC14C8.17c |||SAGA complex subunit Spt8 |Schizosaccharomyces p... 26 2.8
SPCC1919.11 |mug137||BAR adaptor protein|Schizosaccharomyces pom... 26 2.8
SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|... 26 3.7
SPBC36B7.02 |||Svf1 family protein Svf2|Schizosaccharomyces pomb... 26 3.7
SPCC18B5.10c |||TREX complex subunit Tex1 |Schizosaccharomyces p... 26 3.7
SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces pom... 25 4.9
SPAC17D4.01 |pex7|SPAC1834.12|peroxin-7 |Schizosaccharomyces pom... 25 4.9
SPBC1711.16 |||WD repeat protein Pwp1 |Schizosaccharomyces pombe... 25 4.9
SPAC6G9.01c |||conserved protein|Schizosaccharomyces pombe|chr 1... 25 6.5
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc... 25 8.5
SPBC28F2.10c |kap1||chromatin remodeling complex subunit Ngg1 |S... 25 8.5
SPBC31F10.11c |cwf4|syf3|complexed with Cdc5 protein Cwf4 |Schiz... 25 8.5
>SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein
Mfr1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 421
Score = 36.3 bits (80), Expect = 0.003
Identities = 29/116 (25%), Positives = 49/116 (42%), Gaps = 5/116 (4%)
Frame = +2
Query: 164 LIDIKTLEKDDEVTCMEWGNQEQTEILLARRNQQVQIYSTIDGFKATHSSDF-AQGHVVG 340
++D L+ D + ++WG Q+ +L + ++S G K DF A HV
Sbjct: 116 ILDAPYLKNDFYLNLLDWG---QSNVLAVGLASSIYLWSAASG-KVVQLHDFGATNHVTS 171
Query: 341 L--GRSGTLFVTGHSSGVVRIWDEKPVDFQAGAK--LDRLRVCEDDQGLLATGGEE 496
+ GT G SGV+ IWD + K +R+ + L +GG++
Sbjct: 172 VLWTGKGTQLAVGTDSGVIYIWDIESTKSVRSLKGHSERVAALAWNDNTLTSGGKD 227
>SPCC1235.09 |||histone deacetylase complex
subunit|Schizosaccharomyces pombe|chr 3|||Manual
Length = 564
Score = 35.5 bits (78), Expect = 0.005
Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
Frame = +2
Query: 200 VTCMEWGNQEQTEILLARRNQQVQIYSTIDGFK-ATHSSDFAQGHVVGLGRSGTLFVTGH 376
V C++W +E T IL N V +Y+ I + A A + +G TG
Sbjct: 435 VNCIDWNLREGTPILAVASNSIVSMYNAISLQQLAVFMRHTAPVSALSFSHNGRYLATGD 494
Query: 377 SSGVVRIWDEK 409
+SG V IW K
Sbjct: 495 TSGGVCIWSCK 505
>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2609
Score = 33.9 bits (74), Expect = 0.014
Identities = 13/28 (46%), Positives = 21/28 (75%)
Frame = +2
Query: 359 LFVTGHSSGVVRIWDEKPVDFQAGAKLD 442
LF+TGH G++RIW+++ Q+ AKL+
Sbjct: 2452 LFITGHPDGIIRIWEKR---LQSNAKLE 2476
>SPBC646.05c |erg9||squalene synthase Erg9|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 460
Score = 31.9 bits (69), Expect = 0.056
Identities = 13/29 (44%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Frame = -2
Query: 163 ILYTFLIVLACFCVIFYMFK-RTYFTGYK 80
IL+ F I+L C VIFY+F R +++ +K
Sbjct: 427 ILFVFFIILVCLAVIFYVFNIRIHWSDFK 455
>SPCC613.12c |raf1|dos1, cmc1, clr8|Rik1-associated factor
Raf1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 638
Score = 31.5 bits (68), Expect = 0.074
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = +2
Query: 353 GTLFVTGHSSGVVRIWD 403
G LFVTG S G+V++WD
Sbjct: 558 GNLFVTGGSDGIVKVWD 574
>SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 716
Score = 29.5 bits (63), Expect = 0.30
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +2
Query: 170 DIKTLEKDDEVTCMEWGNQEQTEI 241
D ++ ++D+EVT M+WGN EI
Sbjct: 567 DAQSFKQDEEVTLMDWGNAYVREI 590
>SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein
Pop1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 775
Score = 27.9 bits (59), Expect = 0.92
Identities = 16/59 (27%), Positives = 28/59 (47%)
Frame = +2
Query: 227 EQTEILLARRNQQVQIYSTIDGFKATHSSDFAQGHVVGLGRSGTLFVTGHSSGVVRIWD 403
+ +I+++ + ++ IY T G S + +G V G VTG + VR+WD
Sbjct: 415 DDDKIIVSTCSPRINIYDTKTGV-LIRSLEEHEGDVWTFEYVGDTLVTGSTDRTVRVWD 472
>SPCC191.11 |inv1||beta-fructofuranosidase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 581
Score = 26.6 bits (56), Expect = 2.1
Identities = 20/78 (25%), Positives = 33/78 (42%), Gaps = 1/78 (1%)
Frame = +2
Query: 113 IKYYTEASKNNKKCIEN-LIDIKTLEKDDEVTCMEWGNQEQTEILLARRNQQVQIYSTID 289
I Y T+ KK N ++DI +L+ D ++ I+ +N + YS+ D
Sbjct: 200 IAYTTDGGYTFKKYSGNPVLDINSLQFRDPKVIWDFDANRWVMIVAMSQNYGIAFYSSYD 259
Query: 290 GFKATHSSDFAQGHVVGL 343
T S F+ +GL
Sbjct: 260 LIHWTELSVFSTSGYLGL 277
>SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1272
Score = 26.6 bits (56), Expect = 2.1
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = +2
Query: 332 VVGLGRSGTLFVTGHSSGVVRIWDEKPVDFQ 424
V + GTL V G SSG V + D + DFQ
Sbjct: 96 VTSIAYQGTLLVAGTSSGHVLLNDWRTNDFQ 126
>SPBC713.04c |||U3 snoRNP-associated protein
Utp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 854
Score = 26.6 bits (56), Expect = 2.1
Identities = 25/100 (25%), Positives = 43/100 (43%)
Frame = +2
Query: 104 FKHIKYYTEASKNNKKCIENLIDIKTLEKDDEVTCMEWGNQEQTEILLARRNQQVQIYST 283
+++ + +T S+ CI ++ E+ C G+Q+ EI + Q Q+ T
Sbjct: 413 YRNFRTFTAPSRVQFSCI-------AVDPSGEIVCA--GSQDSFEIFMWSV-QTGQLLET 462
Query: 284 IDGFKATHSSDFAQGHVVGLGRSGTLFVTGHSSGVVRIWD 403
+ G + SS + SG+L +G VRIWD
Sbjct: 463 LAGHEGPVSS-------LSFNSSGSLLASGSWDKTVRIWD 495
>SPAC4H3.05 |srs2||ATP-dependent DNA helicase, UvrD
subfamily|Schizosaccharomyces pombe|chr 1|||Manual
Length = 887
Score = 26.2 bits (55), Expect = 2.8
Identities = 13/62 (20%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Frame = +2
Query: 95 IGSFKHIKYYTEASKNNKKCIENLID--IKTLEKDDEVTCMEWGNQEQTEILLARRNQQV 268
+G IKYY + NK+ +E + ++ +++ D ++C+ + + ++ +N
Sbjct: 511 LGILSEIKYYEYLVRKNKETVEEKWENVMELVQQSDNISCIFYELDYKISTIVLLQNFLT 570
Query: 269 QI 274
QI
Sbjct: 571 QI 572
>SPBC14C8.17c |||SAGA complex subunit Spt8 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 526
Score = 26.2 bits (55), Expect = 2.8
Identities = 18/76 (23%), Positives = 35/76 (46%)
Frame = +2
Query: 191 DDEVTCMEWGNQEQTEILLARRNQQVQIYSTIDGFKATHSSDFAQGHVVGLGRSGTLFVT 370
D+EV E +E+T+ + A + + S + +T ++D + +F+T
Sbjct: 316 DEEV---EKAIEEETKSVQANEENETEKPSQTE---STTNNDNIKAPSESSSEESNIFLT 369
Query: 371 GHSSGVVRIWDEKPVD 418
GV+ +WD + VD
Sbjct: 370 TSIDGVMNVWDHRMVD 385
>SPCC1919.11 |mug137||BAR adaptor protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 420
Score = 26.2 bits (55), Expect = 2.8
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = +1
Query: 286 RWFQGHTQFGLRPRSCSRARSLRNALCYRPFKWCGP 393
R + H Q RS RARS+R + P +C P
Sbjct: 342 RIYDLHVQKSHETRSLERARSIRRIVSDDPRDYCSP 377
>SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase
Abc4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1469
Score = 25.8 bits (54), Expect = 3.7
Identities = 13/42 (30%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Frame = +2
Query: 233 TEILLARRNQQVQIYSTIDGFKATHSSDFAQG--HVVGLGRS 352
+ +++A + Q I+ T+D A+ S+F+QG V+ L R+
Sbjct: 1328 SSMIMAHTDDQKPIHITLDTHVASEGSNFSQGQKQVLALARA 1369
>SPBC36B7.02 |||Svf1 family protein Svf2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 353
Score = 25.8 bits (54), Expect = 3.7
Identities = 12/70 (17%), Positives = 33/70 (47%)
Frame = +2
Query: 107 KHIKYYTEASKNNKKCIENLIDIKTLEKDDEVTCMEWGNQEQTEILLARRNQQVQIYSTI 286
KH ++ +++ IE + D+K +D + +++G + + +R ++ +T+
Sbjct: 104 KHFMHFNSSTREWHIVIEGVYDLKIKTEDSGFSLVDFGQNDSS----SRMEHKIFPINTV 159
Query: 287 DGFKATHSSD 316
+G H +
Sbjct: 160 EGTVTAHGRE 169
>SPCC18B5.10c |||TREX complex subunit Tex1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 309
Score = 25.8 bits (54), Expect = 3.7
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Frame = +2
Query: 323 QGHVVGLG--RSGTLFVTGHSSGVVRIWDEKPVDFQAGAKL 439
QG + LG SG+ + SSG V +W+ +DF+ +L
Sbjct: 24 QGPIRSLGWNLSGSRLASSSSSGSVLVWNSDRLDFKFTTEL 64
>SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 380
Score = 25.4 bits (53), Expect = 4.9
Identities = 10/23 (43%), Positives = 12/23 (52%)
Frame = +2
Query: 335 VGLGRSGTLFVTGHSSGVVRIWD 403
V + GTL T G+ RIWD
Sbjct: 186 VSISADGTLCATASYDGMARIWD 208
>SPAC17D4.01 |pex7|SPAC1834.12|peroxin-7 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 308
Score = 25.4 bits (53), Expect = 4.9
Identities = 9/33 (27%), Positives = 15/33 (45%)
Frame = +2
Query: 179 TLEKDDEVTCMEWGNQEQTEILLARRNQQVQIY 277
++E +++TCM W + A N V Y
Sbjct: 185 SIEIPNQITCMNWSKSNHRMVYTADNNNLVYCY 217
>SPBC1711.16 |||WD repeat protein Pwp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 516
Score = 25.4 bits (53), Expect = 4.9
Identities = 28/109 (25%), Positives = 45/109 (41%), Gaps = 6/109 (5%)
Frame = +2
Query: 95 IGSFKHIKYYTEASKNNKKCIENLIDIKTLEKDDEVTCMEWGNQEQTEILLARRNQQVQI 274
IG+ I YY +A +N K + L D ++C+ + + ++ V++
Sbjct: 357 IGTDNGIVYYCDA-RNLSKSVWQL-----QAHDGPISCLSVNPSVPSFVATGSTDRVVKL 410
Query: 275 YSTIDGF-KATHSSDFAQGHVVGLGRS---GTLF--VTGHSSGVVRIWD 403
++T D K S D G V + T F S GVVR+WD
Sbjct: 411 WNTSDSSPKMVVSRDLDVGRVFTCSFTTDESTAFHLAASGSKGVVRVWD 459
>SPAC6G9.01c |||conserved protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 95
Score = 25.0 bits (52), Expect = 6.5
Identities = 12/32 (37%), Positives = 15/32 (46%)
Frame = -3
Query: 429 PA*KSTGFSSQMRTTPLEWPVTKSVPERPSPT 334
PA + + S P + TKS P RP PT
Sbjct: 14 PANEKSNDSKSEAKAPKKGAKTKSTPSRPKPT 45
>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
Apc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1458
Score = 24.6 bits (51), Expect = 8.5
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = -3
Query: 258 FLLARSISVCSWLPHSMHVTSSSFSNVLISIRFSIHFL 145
F + I + S L S H+ S+F N L+ + ++HF+
Sbjct: 439 FHFKKEILIASQL--SSHLDYSTFKNYLMPLAITLHFI 474
>SPBC28F2.10c |kap1||chromatin remodeling complex subunit Ngg1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 551
Score = 24.6 bits (51), Expect = 8.5
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +2
Query: 128 EASKNNKKCIENLIDIKTLEKDDEVTCMEWGN 223
E S N + IEN +D+ KD++ T + + N
Sbjct: 142 EISPENVETIENELDLPVKGKDEQTTGLVYKN 173
>SPBC31F10.11c |cwf4|syf3|complexed with Cdc5 protein Cwf4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 674
Score = 24.6 bits (51), Expect = 8.5
Identities = 11/41 (26%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = +1
Query: 256 ESTGTDILDHRWFQGHTQFGLRPRSCSRARSL-RNALCYRP 375
++ G + L+ R+F +F +R + RAR++ + A+ + P
Sbjct: 232 DALGQEFLNERFFIAFAKFEIRQKEYERARTIFKYAIDFMP 272
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,121,669
Number of Sequences: 5004
Number of extensions: 44902
Number of successful extensions: 161
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 200198394
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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