Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_M22
         (442 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22H10.04 |||protein phosphatase type 2A|Schizosaccharomyces ...    25   3.9  
SPCC553.12c ||SPCC794.13|conserved fungal protein|Schizosaccharo...    25   3.9  
SPAC1486.06 |||nicotinate phosphoribosyltransferase |Schizosacch...    25   5.2  
SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c...    24   9.0  
SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase Ubp22|Sch...    24   9.0  
SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|c...    24   9.0  

>SPAC22H10.04 |||protein phosphatase type 2A|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 307

 Score = 25.4 bits (53), Expect = 3.9
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 161 YKNIVYIGWYESRFIKKIATITQLLC 84
           Y N +++G Y  R    I TIT L+C
Sbjct: 71  YTNYLFLGDYVDRGYYSIETITLLIC 96


>SPCC553.12c ||SPCC794.13|conserved fungal
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 521

 Score = 25.4 bits (53), Expect = 3.9
 Identities = 10/41 (24%), Positives = 18/41 (43%)
 Frame = +3

Query: 255 WFSKVLIGLCFIYFPGRDFIGVLCTTVPFHNLHALYLILKW 377
           WF  VL+    +Y  G     +  +T+P  +  A+  +  W
Sbjct: 265 WFIVVLLVTLLVYIVGEYLTNLYMSTLPHSSTVAIMYVYSW 305


>SPAC1486.06 |||nicotinate phosphoribosyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 410

 Score = 25.0 bits (52), Expect = 5.2
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -3

Query: 110 IATITQLLCR*NRVFIQRWATCFNQSNLIKY*ETF 6
           IA ITQ   + NR+   +W   F  S LI   +TF
Sbjct: 229 IAAITQNYKQANRIASLKWVQTFGTSLLIALTDTF 263


>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1142

 Score = 24.2 bits (50), Expect = 9.0
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = +1

Query: 337  LFIIYMLFILS*NGYSMVNRSQW 405
            L+  ++LF+ + NG+ + N S+W
Sbjct: 1101 LYFFWLLFLYAKNGFFVQNISKW 1123


>SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase
           Ubp22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1108

 Score = 24.2 bits (50), Expect = 9.0
 Identities = 8/19 (42%), Positives = 15/19 (78%)
 Frame = +2

Query: 146 KLYFYIMNRLILIFAPVFI 202
           KLY ++ N+++++F P FI
Sbjct: 799 KLYDFLSNKVLVLFRPRFI 817


>SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 599

 Score = 24.2 bits (50), Expect = 9.0
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +1

Query: 286 SFISLDVILLGYYVPQF 336
           SF  L+ +L  YYVPQ+
Sbjct: 366 SFFYLNYMLFAYYVPQY 382


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,844,884
Number of Sequences: 5004
Number of extensions: 36161
Number of successful extensions: 62
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 160149590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)