Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_M22
         (442 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC039855-1|AAH39855.1|  205|Homo sapiens chromosome 6 open readi...    29   9.4  
BC010003-1|AAH10003.2|  205|Homo sapiens chromosome 6 open readi...    29   9.4  
AL161621-1|CAI15045.1|  205|Homo sapiens RP11-51G5.2 protein.          29   9.4  

>BC039855-1|AAH39855.1|  205|Homo sapiens chromosome 6 open reading
           frame 117 protein.
          Length = 205

 Score = 28.7 bits (61), Expect = 9.4
 Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 5/63 (7%)
 Frame = +1

Query: 196 VHNRT-ELTGSNRDSLVQWMYGLVRF**GSVSFISLDV----ILLGYYVPQFLFIIYMLF 360
           + NRT + + SN D    W Y       G VSF  L      I++G++V   +F+I+M F
Sbjct: 7   ISNRTSQQSASNSD--YTWEYEYYEI--GPVSFEGLKAHKYSIVIGFWVGLAVFVIFMFF 62

Query: 361 ILS 369
           +L+
Sbjct: 63  VLT 65


>BC010003-1|AAH10003.2|  205|Homo sapiens chromosome 6 open reading
           frame 117 protein.
          Length = 205

 Score = 28.7 bits (61), Expect = 9.4
 Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 5/63 (7%)
 Frame = +1

Query: 196 VHNRT-ELTGSNRDSLVQWMYGLVRF**GSVSFISLDV----ILLGYYVPQFLFIIYMLF 360
           + NRT + + SN D    W Y       G VSF  L      I++G++V   +F+I+M F
Sbjct: 7   ISNRTSQQSASNSD--YTWEYEYYEI--GPVSFEGLKAHKYSIVIGFWVGLAVFVIFMFF 62

Query: 361 ILS 369
           +L+
Sbjct: 63  VLT 65


>AL161621-1|CAI15045.1|  205|Homo sapiens RP11-51G5.2 protein.
          Length = 205

 Score = 28.7 bits (61), Expect = 9.4
 Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 5/63 (7%)
 Frame = +1

Query: 196 VHNRT-ELTGSNRDSLVQWMYGLVRF**GSVSFISLDV----ILLGYYVPQFLFIIYMLF 360
           + NRT + + SN D    W Y       G VSF  L      I++G++V   +F+I+M F
Sbjct: 7   ISNRTSQQSASNSD--YTWEYEYYEI--GPVSFEGLKAHKYSIVIGFWVGLAVFVIFMFF 62

Query: 361 ILS 369
           +L+
Sbjct: 63  VLT 65


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 61,659,014
Number of Sequences: 237096
Number of extensions: 1244992
Number of successful extensions: 1316
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1279
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1316
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3602345922
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)