Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_M22
         (442 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40939-5|AAA81703.3|  343|Caenorhabditis elegans Hypothetical pr...    29   1.5  
L16621-7|ABA00181.1|  300|Caenorhabditis elegans Hypothetical pr...    28   3.5  
Z93393-4|CAB07699.1|  360|Caenorhabditis elegans Hypothetical pr...    27   4.6  

>U40939-5|AAA81703.3|  343|Caenorhabditis elegans Hypothetical
           protein F13D11.4 protein.
          Length = 343

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = -1

Query: 274 IRTLLNHTSIAQVNHGSTQSVQFDYEHWSE-DQD*AIHYIK 155
           +R L+  +S A VN G TQ   FD + WS  + D    YIK
Sbjct: 116 VRKLVLTSSCAAVNEGYTQDRVFDEDSWSNLESDMVDCYIK 156


>L16621-7|ABA00181.1|  300|Caenorhabditis elegans Hypothetical
           protein ZK688.10 protein.
          Length = 300

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = +2

Query: 347 FTCSLSY-LEMAIVWLIGVNGYRYFQVLSDD 436
           F CS +Y L + + W IG++G  Y Q  + D
Sbjct: 81  FLCSAAYKLYLLVAWCIGLSGLMYLQKPTPD 111


>Z93393-4|CAB07699.1|  360|Caenorhabditis elegans Hypothetical
           protein Y48E1B.3 protein.
          Length = 360

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 16/38 (42%), Positives = 22/38 (57%)
 Frame = +1

Query: 148 TIFLYNESLNLDLRSSVHNRTELTGSNRDSLVQWMYGL 261
           TIFL+  S +LDL   + N   LT   R + + W+YGL
Sbjct: 56  TIFLFAIS-SLDLLGELDNL--LTPERRQAYIDWIYGL 90


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,859,957
Number of Sequences: 27780
Number of extensions: 192579
Number of successful extensions: 429
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 427
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 429
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 756625558
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)