Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_M21
         (627 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1672.02c |sap1||switch-activating protein Sap1|Schizosacchar...    27   2.9  
SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr...    26   3.9  
SPCC794.06 |||TDT malic acid transporter|Schizosaccharomyces pom...    26   5.1  
SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase |Schizosa...    25   6.8  
SPBC1773.09c |mug184||meiotically upregulated gene Mug184|Schizo...    25   9.0  

>SPCC1672.02c |sap1||switch-activating protein
           Sap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 254

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -1

Query: 249 NRKRSIFYSSELKITYKDKGICFH 178
           +RK S FY+   +I Y+D+G+  H
Sbjct: 53  DRKTSEFYAKIARIGYEDEGLAIH 76


>SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1250

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +1

Query: 103 YAFTYIFNKIKQNEEILNDKN*ILKVK 183
           Y+ T   NK+  ++E+LND N  L V+
Sbjct: 779 YSHTSGLNKVSHHKEVLNDPNSYLTVR 805


>SPCC794.06 |||TDT malic acid transporter|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 431

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +3

Query: 366 INTLAFSIIIVHYYYLMKIYYCLISL-YINLIGXLNRNYKN 485
           +NTL   II +    ++ +Y C I+  +I   G L++ +KN
Sbjct: 58  LNTLG-KIIFIFQLSILTLYICCITFRFIRYPGTLSKTWKN 97


>SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 783

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -2

Query: 227 ILLN*KSHIKIKEYVFTFKIQFLSFKISSFCLILLKIYVN 108
           +++  +  I I+ YVF  KIQ +   ISS   IL   + N
Sbjct: 287 LIVRNEESIDIRSYVFHKKIQLIKVTISSEMNILKSDFAN 326


>SPBC1773.09c |mug184||meiotically upregulated gene
           Mug184|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 551

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 14/46 (30%), Positives = 26/46 (56%)
 Frame = +3

Query: 309 ALPSIPLSFTPSTPMFIIVINTLAFSIIIVHYYYLMKIYYCLISLY 446
           A+PSIP+   PS P+F    +++ F++    Y+  + ++  L S Y
Sbjct: 441 AMPSIPVIQPPSFPIF----SSIDFNVRNREYWNQLMVFQKLYSKY 482


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,092,455
Number of Sequences: 5004
Number of extensions: 37830
Number of successful extensions: 71
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)