Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_M21
         (627 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_03_0101 + 12374771-12374926,12375505-12375731,12375816-123759...    32   0.43 
02_04_0370 - 22427559-22427590,22427783-22427964,22428754-224289...    32   0.43 
06_01_0723 - 5287864-5287885,5287971-5288043,5288521-5288626,528...    27   9.2  

>09_03_0101 +
           12374771-12374926,12375505-12375731,12375816-12375971,
           12376066-12376251,12376407-12376591,12376984-12376991
          Length = 305

 Score = 31.9 bits (69), Expect = 0.43
 Identities = 11/30 (36%), Positives = 21/30 (70%)
 Frame = +3

Query: 348 PMFIIVINTLAFSIIIVHYYYLMKIYYCLI 437
           P++  V N+L FS++++H Y+ + IY  L+
Sbjct: 259 PIYYYVFNSLLFSLLVLHIYWWVLIYRMLV 288


>02_04_0370 -
           22427559-22427590,22427783-22427964,22428754-22428939,
           22429125-22429280,22429366-22429589,22430933-22430968,
           22431390-22431539
          Length = 321

 Score = 31.9 bits (69), Expect = 0.43
 Identities = 11/30 (36%), Positives = 21/30 (70%)
 Frame = +3

Query: 348 PMFIIVINTLAFSIIIVHYYYLMKIYYCLI 437
           P++  V N+L FS++++H Y+ + IY  L+
Sbjct: 268 PIYYYVFNSLLFSLLVLHIYWWVLIYRMLV 297


>06_01_0723 -
           5287864-5287885,5287971-5288043,5288521-5288626,
           5288829-5288891,5290165-5290249,5290337-5290377,
           5291260-5291323,5291647-5291716,5291886-5291960,
           5292070-5292164,5293671-5293771,5293852-5293874,
           5293956-5294031,5294229-5294322,5294493-5294548,
           5296204-5296327,5296607-5296743
          Length = 434

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = +3

Query: 306 PALPSIPLSFTPSTPMFIIV-INTLAFSII 392
           P L  +PL F P  P++IIV I  + F++I
Sbjct: 249 PLLSWVPLPFIPDIPLYIIVMILMILFAVI 278


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,753,297
Number of Sequences: 37544
Number of extensions: 164625
Number of successful extensions: 254
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 253
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 254
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)