Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0002_M20
(612 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1455 + 27230134-27231110,27231195-27231327,27231417-272315... 32 0.31
09_01_0066 - 978018-978500,978588-979034,979113-979412,979521-97... 28 5.1
02_02_0637 - 12491706-12492575,12492580-12492657 28 5.1
10_08_0434 + 17896432-17896551,17896709-17896786,17898528-17898836 28 6.7
07_01_0725 - 5532803-5533324,5533631-5533657,5534285-5534398,553... 28 6.7
05_04_0113 + 18085705-18085833,18086442-18086885 28 6.7
02_03_0247 - 16809742-16809780,16810070-16810298,16810381-168105... 28 6.7
12_02_0591 + 20864861-20867329 27 8.9
08_02_0703 - 20188489-20190246 27 8.9
04_02_0006 + 8455219-8457469,8457560-8457924 27 8.9
03_05_0520 + 25139314-25139364,25139580-25139711,25141594-251417... 27 8.9
01_06_1545 + 38144624-38145301 27 8.9
01_01_0070 - 542603-542686,542803-543441 27 8.9
>08_02_1455 +
27230134-27231110,27231195-27231327,27231417-27231501,
27233372-27233571
Length = 464
Score = 32.3 bits (70), Expect = 0.31
Identities = 27/79 (34%), Positives = 34/79 (43%)
Frame = -1
Query: 393 PAAVTXSPNPGMCVSVRLTPWPFTLSSATPAVAAPSFCLLVKSKEPIALTIFLSLPAKGT 214
P A +PG V +P P LSSA A AA S+ L S P A P
Sbjct: 9 PGARPHHLSPGQPPVVPRSPTPLDLSSAAAAAAAASYRRLSPSLRPPA------HPQARL 62
Query: 213 LTPAPEVPSELSVRAPCAS 157
+P P++PS S A +S
Sbjct: 63 PSPYPQIPSSSSAAAAGSS 81
>09_01_0066 -
978018-978500,978588-979034,979113-979412,979521-979855,
980325-980703
Length = 647
Score = 28.3 bits (60), Expect = 5.1
Identities = 21/71 (29%), Positives = 30/71 (42%), Gaps = 2/71 (2%)
Frame = -1
Query: 357 CVSVRLTPWPFTLSSATPAVAAPSFCLLVKSKEPIALTIFLSLPAKG-TLTPAPEVPSE- 184
C S L P ++ SA + P+ C L+ P F L A+G P PE
Sbjct: 467 CASTELAENPTSVDSAVDHITEPTSCTLIVRVMP----TFTVLAAEGLAYKPTPETRVHG 522
Query: 183 LSVRAPCASLR 151
+RA CA ++
Sbjct: 523 AQLRADCAKVQ 533
>02_02_0637 - 12491706-12492575,12492580-12492657
Length = 315
Score = 28.3 bits (60), Expect = 5.1
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = -1
Query: 396 SPAAVTXSPNPGMCVSVRLTPWPFTLSSATPAVAAPS 286
SPA T + + C S R TPW T S+ + +PS
Sbjct: 119 SPARATSTTHSPFCHSWRTTPWLPTSCSSPTSSTSPS 155
>10_08_0434 + 17896432-17896551,17896709-17896786,17898528-17898836
Length = 168
Score = 27.9 bits (59), Expect = 6.7
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +2
Query: 431 TAKAFATRNMPDIADVPDFNTV 496
T K FA + DI +VPDFNT+
Sbjct: 77 TIKNFAVIYLVDITEVPDFNTM 98
>07_01_0725 -
5532803-5533324,5533631-5533657,5534285-5534398,
5534564-5534731,5535951-5536193,5537178-5537261,
5537357-5538117,5539637-5539730,5540633-5540899,
5541311-5541316,5542538-5542657
Length = 801
Score = 27.9 bits (59), Expect = 6.7
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +2
Query: 431 TAKAFATRNMPDIADVPDFNTV 496
T K FA + DI +VPDFNT+
Sbjct: 53 TIKNFAVIYLVDITEVPDFNTM 74
>05_04_0113 + 18085705-18085833,18086442-18086885
Length = 190
Score = 27.9 bits (59), Expect = 6.7
Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 9/76 (11%)
Frame = +2
Query: 119 EEPELLTSSRVRRDAHGALTLNSD-------GTSGAGVKVPFAGNDKNIVSAIGSLDL-- 271
E+ TS+R R G LT+ ++ G GAG ++P AG D + G +
Sbjct: 30 EDSPAATSTRKRLVGSGKLTIVAEIPRLALGGGGGAGERLPAAGEDSAAATNTGKCQVVG 89
Query: 272 TNRQKLGAATAGVALD 319
++ + AA+AG+ D
Sbjct: 90 SSLAAMVAASAGIQPD 105
>02_03_0247 -
16809742-16809780,16810070-16810298,16810381-16810551,
16810630-16811516,16811604-16812050,16812129-16812836
Length = 826
Score = 27.9 bits (59), Expect = 6.7
Identities = 21/71 (29%), Positives = 29/71 (40%), Gaps = 2/71 (2%)
Frame = -1
Query: 357 CVSVRLTPWPFTLSSATPAVAAPSFCLLVKSKEPIALTIFLSLPAKG-TLTPAPEVPSE- 184
C S L P ++ SA + P+ C L P F L A+G P PE
Sbjct: 365 CASTELAENPTSIDSAVDHITEPTSCTLTVRVMP----TFTVLAAEGLAYKPTPETTVHG 420
Query: 183 LSVRAPCASLR 151
+RA CA ++
Sbjct: 421 AQLRADCAKVQ 431
>12_02_0591 + 20864861-20867329
Length = 822
Score = 27.5 bits (58), Expect = 8.9
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -3
Query: 394 AGSCHLVSEPGDVCIRETY 338
AG CHL EPG V +R +
Sbjct: 299 AGECHLAGEPGLVAVRRFF 317
>08_02_0703 - 20188489-20190246
Length = 585
Score = 27.5 bits (58), Expect = 8.9
Identities = 30/101 (29%), Positives = 42/101 (41%)
Frame = -1
Query: 420 LSLWKRFTSPAAVTXSPNPGMCVSVRLTPWPFTLSSATPAVAAPSFCLLVKSKEPIALTI 241
LSL S A PN + ++R W A PA PS +++E L
Sbjct: 84 LSLCPPGASAATAAAIPNDALRAAIRT--WCARHGRAPPA--PPS---AAEAREAALLRA 136
Query: 240 FLSLPAKGTLTPAPEVPSELSVRAPCASLRTLELVNSSGSS 118
+ A+ T T A VP+ S C+S + +SSGSS
Sbjct: 137 VPAAAAR-TTTVAAMVPARSSSNLSCSSRASAASTSSSGSS 176
>04_02_0006 + 8455219-8457469,8457560-8457924
Length = 871
Score = 27.5 bits (58), Expect = 8.9
Identities = 17/58 (29%), Positives = 28/58 (48%)
Frame = -1
Query: 402 FTSPAAVTXSPNPGMCVSVRLTPWPFTLSSATPAVAAPSFCLLVKSKEPIALTIFLSL 229
F P +V+ N G+C ++ + P SS PA + LL+K I + +F +L
Sbjct: 437 FQRPNSVSLEGNKGLCANIHILNLPICPSS--PAKTKNNKRLLLKVIPSITIALFSAL 492
>03_05_0520 +
25139314-25139364,25139580-25139711,25141594-25141731,
25143191-25143241,25143662-25143751,25143854-25144000,
25144108-25144218,25144307-25144375,25144777-25145517,
25145840-25146004,25146376-25146442,25146580-25146704,
25148714-25148983,25149065-25149199,25149316-25149497,
25149669-25149744
Length = 849
Score = 27.5 bits (58), Expect = 8.9
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Frame = -1
Query: 330 PFTLSSATPAVAAPSFCLLVKSKEPIALTIFLSLPAKGTLTPAPE-VPSELSVRAPCASL 154
P T+S++T AV+ + + + + T LPA T APE +P+ S AP S
Sbjct: 310 PTTISTSTAAVSVSAETISSPVRPIVPTTTAAVLPASVTARSAPENIPAVTS--APANSS 367
Query: 153 RTLE 142
TL+
Sbjct: 368 STLK 371
>01_06_1545 + 38144624-38145301
Length = 225
Score = 27.5 bits (58), Expect = 8.9
Identities = 11/27 (40%), Positives = 19/27 (70%)
Frame = +3
Query: 513 ICSTIRLVHQRPPLTRTSSIVTITPWT 593
ICST RL+H +P L T++ + +P++
Sbjct: 19 ICSTHRLLHPQPQLAATAASSSSSPFS 45
>01_01_0070 - 542603-542686,542803-543441
Length = 240
Score = 27.5 bits (58), Expect = 8.9
Identities = 26/95 (27%), Positives = 32/95 (33%), Gaps = 3/95 (3%)
Frame = -1
Query: 399 TSPAAVTXSPNPGMCVSVRLTPWPFTLSSATPAVAAPSFCLLVKSKEPIALTIF--LSLP 226
T P P +TP P T +P A P L + P+A +LP
Sbjct: 81 TPPPPTPKKAPPPPVTPPPVTPPPVTPPPVSPPPATPPPALPPSTPPPVAAPAEAPAALP 140
Query: 225 AKGTLTPAPEVPSEL-SVRAPCASLRTLELVNSSG 124
T P E P+EL AP S N G
Sbjct: 141 PATTPPPVAEAPAELPPAEAPTKSKNKHRKKNKRG 175
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,909,192
Number of Sequences: 37544
Number of extensions: 366520
Number of successful extensions: 1163
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1162
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -