Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_M19
         (625 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pomb...    26   3.8  
SPAC589.07c |||WD repeat protein Atg18|Schizosaccharomyces pombe...    26   3.8  
SPAC24H6.04 |hxk1||hexokinase 1 |Schizosaccharomyces pombe|chr 1...    25   8.9  

>SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1283

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -2

Query: 516  CKTMTKLKTHERIISCNDYKNDG 448
            C T +  K+++ I  CN+Y N G
Sbjct: 1247 CNTWSYQKSYDYITGCNNYDNQG 1269


>SPAC589.07c |||WD repeat protein Atg18|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 373

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = -2

Query: 516 CKTMTKLKTHERIISCNDYKNDG 448
           CK +TK++ H+  ++C  + +DG
Sbjct: 178 CKQITKIEAHKDSLACLAFNSDG 200


>SPAC24H6.04 |hxk1||hexokinase 1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 484

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = -1

Query: 313 YSFSTCSSIVIN**FCSVSNKHFGFPLTSYN 221
           Y F    +++IN  +C   N+H   P T Y+
Sbjct: 256 YDFPEDMNMIINCEWCDFDNQHVVLPRTKYD 286


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,225,627
Number of Sequences: 5004
Number of extensions: 41442
Number of successful extensions: 66
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)