Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0002_M18
(387 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16H5.02 |pfk1||6-phosphofructokinase |Schizosaccharomyces po... 26 1.8
SPAC19A8.12 |dcp2||mRNA decapping complex subunit Dcp2|Schizosac... 25 4.1
SPBC31F10.09c |nut2|med10|mediator complex subunit Med10|Schizos... 25 5.5
SPBC14C8.06 |arc1|sop2|ARP2/3 actin-organizing complex subunit S... 25 5.5
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 25 5.5
SPAC644.12 |cdc5||cell division control protein Cdc5|Schizosacch... 25 5.5
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 24 7.2
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S... 24 9.6
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 24 9.6
SPAC27D7.07c |smd1||Sm snRNP core protein Smd1|Schizosaccharomyc... 24 9.6
>SPBC16H5.02 |pfk1||6-phosphofructokinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 942
Score = 26.2 bits (55), Expect = 1.8
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +2
Query: 44 LGAVPRGAVPPRADRVLRDLQG 109
LG V RG +P DR+L LQG
Sbjct: 476 LGHVQRGGIPCAYDRMLATLQG 497
>SPAC19A8.12 |dcp2||mRNA decapping complex subunit
Dcp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 25.0 bits (52), Expect = 4.1
Identities = 10/38 (26%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
Frame = +3
Query: 279 IWKWCDLDAHDNDXFVSRHELFPIRAPL---MSLEHCI 383
+WKW + D F+ P+R + MS++ C+
Sbjct: 75 LWKWSKVHEEAFDDFLRYKTRIPVRGAIMLDMSMQQCV 112
>SPBC31F10.09c |nut2|med10|mediator complex subunit
Med10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 138
Score = 24.6 bits (51), Expect = 5.5
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +2
Query: 56 PRGAVPPRADRVLRDLQGNAGVQRERNVRLP 148
P A+P D ++RDL+ + R+ N +P
Sbjct: 34 PSDAIPESLDTLIRDLKSLPDISRKVNNLIP 64
>SPBC14C8.06 |arc1|sop2|ARP2/3 actin-organizing complex subunit
Sop2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 377
Score = 24.6 bits (51), Expect = 5.5
Identities = 9/22 (40%), Positives = 17/22 (77%)
Frame = +3
Query: 309 DNDXFVSRHELFPIRAPLMSLE 374
+ND +VS+H P+R+ ++SL+
Sbjct: 132 ENDWWVSKHLKRPLRSTILSLD 153
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 24.6 bits (51), Expect = 5.5
Identities = 16/56 (28%), Positives = 21/56 (37%)
Frame = -1
Query: 168 ASRACAAGSLTFRSRCTPAFPCKSRSTRSARGGTAPRGTAPSGRGRGSAVGTPRSP 1
AS A S + S P S + S+RG T T P RG + +P
Sbjct: 264 ASSTIAEVSPMYGSHAAPYASTPSAAVGSSRGSTPASATVPISPARGFPTTSAYNP 319
>SPAC644.12 |cdc5||cell division control protein
Cdc5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 757
Score = 24.6 bits (51), Expect = 5.5
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = -1
Query: 75 GGTAPRGTAPSGRGRGSAVGTPRS 4
GGT G PS GSA+ P++
Sbjct: 409 GGTGYTGVTPSHAANGSALAAPQA 432
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 24.2 bits (50), Expect = 7.2
Identities = 13/36 (36%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Frame = +2
Query: 17 PTALPLPRPLGAVPRGAVPPRADRV-LRDLQGNAGV 121
P ALP P A P A+PP + GN G+
Sbjct: 1887 PMALPKAGPPSAAPTSALPPAGPPAGATAISGNPGM 1922
>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1944
Score = 23.8 bits (49), Expect = 9.6
Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
Frame = -2
Query: 245 LGLALHAQVVGGELAPLGQVAHYVEQPVAHAPREV*HFV-LAALRHFPASPVVLDLHVVV 69
L L L + +L + Q + +A + F L +LRH P S +LD +V
Sbjct: 1193 LELCLRMNIESIDLQEYAPNIRFTAQKLFNATTSLREFAALKSLRHLPLSQRILDANVTR 1252
Query: 68 L 66
L
Sbjct: 1253 L 1253
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 23.8 bits (49), Expect = 9.6
Identities = 13/22 (59%), Positives = 14/22 (63%)
Frame = -1
Query: 81 ARGGTAPRGTAPSGRGRGSAVG 16
ARGG RG A GRG GS+ G
Sbjct: 43 ARGGRGGRGGARGGRG-GSSGG 63
>SPAC27D7.07c |smd1||Sm snRNP core protein Smd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 117
Score = 23.8 bits (49), Expect = 9.6
Identities = 11/29 (37%), Positives = 14/29 (48%)
Frame = -1
Query: 102 KSRSTRSARGGTAPRGTAPSGRGRGSAVG 16
K + RG RG GRGRG++ G
Sbjct: 88 KQKKKEVVRGRGRGRGRGTRGRGRGASRG 116
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.314 0.120 0.441
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,323,971
Number of Sequences: 5004
Number of extensions: 22757
Number of successful extensions: 83
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 128344734
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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