Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_M17
         (168 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC139.03 |||transcription factor, zf-fungal binuclear cluster ...    26   0.77 
SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyce...    25   1.8  
SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion cytoch...    24   3.1  
SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion ...    24   3.1  
SPAC13G6.13 ||SPAC24B11.02|sequence orphan|Schizosaccharomyces p...    23   4.1  
SPAC29B12.10c |||OPT oligopeptide transporter family|Schizosacch...    23   7.1  
SPCC736.04c |gma12||alpha-1,2-galactosyltransferase Gma12 |Schiz...    23   7.1  
SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces ...    23   7.1  
SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchang...    23   7.1  
SPAC23H4.13c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual       23   7.1  
SPBC16A3.16 |||mitochondrial inner membrane protein involved in ...    22   9.4  
SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomy...    22   9.4  
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc...    22   9.4  
SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces po...    22   9.4  

>SPAC139.03 |||transcription factor, zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 625

 Score = 25.8 bits (54), Expect = 0.77
 Identities = 9/16 (56%), Positives = 14/16 (87%)
 Frame = -2

Query: 83  VVVDIRRSVWANVVVT 36
           V+ +IRR VWAN+V++
Sbjct: 336 VISEIRRRVWANIVLS 351


>SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1297

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 39   NHNIRPYTSPNVDNDTHFYRDSRHNTT 119
            N  I+ YTS   D + H  +DS+ N+T
Sbjct: 1149 NDFIQLYTSDKNDQEIHENKDSQRNST 1175


>SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion
           cytochrome c oxidase assembly protein Cox1101,
           mitochondrial ribosomal protein
           Rsm22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 753

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +3

Query: 30  YKCNHNIRPYTSPN 71
           Y  +HNI P TSPN
Sbjct: 215 YDIHHNIYPSTSPN 228


>SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion
           cytochrome c oxidase assembly protein Cox1102,
           mitochondrial ribosomal protein
           Rsm2202|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 753

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +3

Query: 30  YKCNHNIRPYTSPN 71
           Y  +HNI P TSPN
Sbjct: 215 YDIHHNIYPSTSPN 228


>SPAC13G6.13 ||SPAC24B11.02|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 115

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = -2

Query: 131 SQYLSSVVSRIAIKMRVVVDIRRSVWANVVV 39
           S+Y+  ++  + +K+   V IRR+    V V
Sbjct: 75  SKYIKIIICSVLLKLNTTVIIRRNTHTKVYV 105


>SPAC29B12.10c |||OPT oligopeptide transporter
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 851

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -2

Query: 74  DIRRSVWANVVVTLIFIL*YI 12
           D +  VWA +V  LIFI+ +I
Sbjct: 555 DTQCPVWALIVALLIFIVNFI 575


>SPCC736.04c |gma12||alpha-1,2-galactosyltransferase Gma12
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 375

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 8/28 (28%), Positives = 17/28 (60%)
 Frame = -2

Query: 125 YLSSVVSRIAIKMRVVVDIRRSVWANVV 42
           + S++ +++  KM+ ++D   S W  VV
Sbjct: 23  WTSAMDTKLQTKMKEIIDQHTSTWTPVV 50


>SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 878

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 7/21 (33%), Positives = 16/21 (76%)
 Frame = +1

Query: 13  IYYNINISVTTTFAHTLRRMS 75
           IY++ ++++ T F H+L++ S
Sbjct: 226 IYFSNDLNLPTNFRHSLQKFS 246


>SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchange
           factor Sec73 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = +3

Query: 33  KCNHNIRPYTSPNVDNDTHFYRD 101
           + N  +  Y+S +V ND++F +D
Sbjct: 103 QANSPVASYSSQSVSNDSNFPKD 125


>SPAC23H4.13c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 184

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 12/43 (27%), Positives = 21/43 (48%)
 Frame = +1

Query: 1   FLLFIYYNINISVTTTFAHTLRRMSTTTRIFIAIRDTTLLKYW 129
           FL++I Y  +IS  +TF  T   +       +A+R   +  Y+
Sbjct: 37  FLIYILYTFSISGLSTFVITKYYIRPQWLYTLALRRALIKLYY 79


>SPBC16A3.16 |||mitochondrial inner membrane protein involved in
           cytochrome c oxidase assembly Pet191
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 85

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 7/22 (31%), Positives = 13/22 (59%)
 Frame = -1

Query: 111 CVANRDKNACRCRHSAKCMGEC 46
           C+ N+D+    C++  +  GEC
Sbjct: 32  CLKNKDELPEECKNLIEAYGEC 53


>SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 603

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = +1

Query: 22  NINISVTTTFAHTLRRMSTTTRIFIAI 102
           N+    T  F HT+R +    R+FI +
Sbjct: 453 NVRSLFTLPFFHTIRNIERHFRLFIRL 479


>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 529

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +3

Query: 42  HNIRPYTSPNVDNDTHFYRDSRHNTT 119
           +N+   TSPNV N    Y    +NTT
Sbjct: 86  YNVSRVTSPNVANFAPGYFPLPNNTT 111


>SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1564

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 14/49 (28%), Positives = 23/49 (46%)
 Frame = -2

Query: 167 GRLFPYARITLASQYLSSVVSRIAIKMRVVVDIRRSVWANVVVTLIFIL 21
           G  FP A  +L       +VS       V+ D+  S+W  V ++L +I+
Sbjct: 526 GFFFPNAERSLPKGTRGRIVSVDTYPPVVMWDLNYSLWEAVGISLNYIV 574


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 658,668
Number of Sequences: 5004
Number of extensions: 9166
Number of successful extensions: 29
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29
length of database: 2,362,478
effective HSP length: 36
effective length of database: 2,182,334
effective search space used: 41464346
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)