Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_M17
         (168 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1525 - 34156813-34157058,34157245-34157435,34157885-341579...    27   1.5  

>04_04_1525 -
           34156813-34157058,34157245-34157435,34157885-34157956,
           34158351-34158419,34158531-34158639,34158872-34158987,
           34159117-34159210,34159289-34159460,34159545-34159669
          Length = 397

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +2

Query: 2   FYYLYXXXXXXV*PQHSPIHFAECRQRHAF 91
           FYY        V P+ +  HF+EC +RHA+
Sbjct: 189 FYYFMTVAMYMVSPRMA-YHFSECVERHAY 217


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,932,601
Number of Sequences: 37544
Number of extensions: 51848
Number of successful extensions: 137
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 14,793,348
effective HSP length: 36
effective length of database: 13,441,764
effective search space used: 255393516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)