Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_M16
         (571 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11B10.04c |mrps28||mitochondrial ribosomal protein subunit S...    28   1.1  
SPBC14C8.02 |tim44||TIM23 translocase complex subunit Tim44|Schi...    28   1.1  
SPCC188.02 |par1||protein phosphatase regulatory subunit Par1 |S...    27   1.5  
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac...    26   3.4  
SPBC428.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   3.4  
SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogam...    25   5.9  
SPBC530.05 |||transcription factor |Schizosaccharomyces pombe|ch...    25   5.9  
SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|...    25   7.8  

>SPBC11B10.04c |mrps28||mitochondrial ribosomal protein subunit
           S28|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 288

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = -2

Query: 372 DKIGASATAAHTDFINRNDYSLDGKLNLFKSPDTSVDFNA-GFKK 241
           +KI ASAT    DFI  N+      +N F S DTS++ N  GF++
Sbjct: 119 EKIRASATEETKDFIKLNE------VNEFPSSDTSLESNQDGFER 157


>SPBC14C8.02 |tim44||TIM23 translocase complex subunit
           Tim44|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 427

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +2

Query: 179 YLESENPKLGSQEDFMKGVSNFLKPALKSTEVSGLLKRF 295
           Y ESE+P + S  D    +S         TE S +++RF
Sbjct: 235 YQESEHPIVSSIRDMADSISGVWSRMFSETEASQVMRRF 273


>SPCC188.02 |par1||protein phosphatase regulatory subunit Par1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 548

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 14/52 (26%), Positives = 24/52 (46%)
 Frame = +1

Query: 4   VSSFFFFFCELKLYLLGGHYFIHLH*RNIHLVISFNAKIIQYISKFRYIELV 159
           +SS  F   E  LY     YF+HL   N+ +++      +  ISK  +  ++
Sbjct: 414 ISSQNFQVAERALYFFNNDYFVHLVEENVDIILPIIYPALFEISKSHWNRVI 465


>SPAC18G6.05c |||translation elongation regulator Gcn1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2670

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 18/55 (32%), Positives = 26/55 (47%)
 Frame = +2

Query: 218 DFMKGVSNFLKPALKSTEVSGLLKRFSFPSRE*SLRLMKSV*AAVADAPILSLNI 382
           DF K   N L           ++  FSF SRE S R +K + +A+   P L ++I
Sbjct: 576 DFAKVSDNLLFSNFVERWFQSVIGVFSFASRENSNRALKILKSAILYRPHLRMSI 630


>SPBC428.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 115

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -2

Query: 249 FKKFDTPFMKSSWEPNFGFSL 187
           F+K++T F+KS +  N G SL
Sbjct: 38  FEKYETSFLKSLFNGNLGLSL 58


>SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogamy
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 543

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = +2

Query: 404 VLKLGTLAISGIFLVAKAFAVMSWLSLWKRFTLPAAVTLS 523
           ++  G+L+I  IF+    F + SW++L+   T   A TLS
Sbjct: 401 IIVFGSLSI--IFIHIYCFKITSWVNLYGWITCTIARTLS 438


>SPBC530.05 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 743

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = -2

Query: 333 FINRNDYSLDGKLNLFKSPDTSVD 262
           F   N Y   G  N FK PD S+D
Sbjct: 206 FTRENFYQKFGSPNCFKKPDGSID 229


>SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 699

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = -2

Query: 405 TVGGGIDYMFKD-KIGASATAAHTDFIN 325
           +VG  I Y  +D K+    TA+H DF+N
Sbjct: 25  SVGRAIRYCKEDGKVEGCETASHVDFLN 52


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,159,460
Number of Sequences: 5004
Number of extensions: 43927
Number of successful extensions: 135
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 242064240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)