Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_M12
         (612 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces ...    32   0.057
SPBC15D4.11c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    29   0.40 
SPBC1348.08c |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    29   0.53 
SPAC977.07c |||glycoprotein |Schizosaccharomyces pombe|chr 1|||M...    29   0.53 
SPCC4B3.14 |cwf20||complexed with Cdc5 protein Cwf20 |Schizosacc...    27   2.8  
SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit Cdc21...    26   3.7  
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein...    25   6.5  
SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual    25   6.5  
SPAC6G10.07 |||nuclear cap-binding complex large subunit |Schizo...    25   8.6  

>SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 528

 Score = 32.3 bits (70), Expect = 0.057
 Identities = 23/79 (29%), Positives = 38/79 (48%)
 Frame = +1

Query: 115 LTRVKMSQPYERSNKRQCESRARNVTRECLQQTPVLLHSNSPSTFTASKHSWTIKSISTS 294
           +T  K+  P+ERS   Q      + T    Q +P   +S++ ++ T+SKHS  I     S
Sbjct: 433 VTIPKILSPHERSLLEQLADALNDSTARRTQSSPSGTNSSTSTSSTSSKHSTGI-----S 487

Query: 295 TQTARGSLAKRPTTLGSLF 351
           T+   G   K+  ++G  F
Sbjct: 488 TEPTTGEENKQDGSVGGFF 506


>SPBC15D4.11c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 263

 Score = 29.5 bits (63), Expect = 0.40
 Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
 Frame = +3

Query: 6   KIITFLAYLEGPVLDTMLPK-GKGTILHSFVMATDKSLNARENVAAIRALEQATMRIARE 182
           K+ + L Y++  VLD  LPK G    LHSF++  D SLN    ++A++   +  +R+   
Sbjct: 47  KLDSELGYVK-QVLDETLPKKGYEKALHSFIIHEDPSLN---YISALKETAKERIRVTVP 102

Query: 183 KRYQGVFATNTSPLT 227
                     T P+T
Sbjct: 103 VYSSRKSYVQTKPIT 117


>SPBC1348.08c |||glycoprotein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 416

 Score = 29.1 bits (62), Expect = 0.53
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +1

Query: 187 VTRECLQQTPVLLHSNSPSTFTASKHSWTIKSISTSTQT 303
           V+  C + T +     SP T T    S + KSI+TSTQ+
Sbjct: 40  VSVSCPKYTTIYTSGTSPDTKTIYPESTSTKSITTSTQS 78


>SPAC977.07c |||glycoprotein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 416

 Score = 29.1 bits (62), Expect = 0.53
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +1

Query: 187 VTRECLQQTPVLLHSNSPSTFTASKHSWTIKSISTSTQT 303
           V+  C + T +     SP T T    S + KSI+TSTQ+
Sbjct: 40  VSVSCPKYTTIYTSGTSPDTKTIYPESTSTKSITTSTQS 78


>SPCC4B3.14 |cwf20||complexed with Cdc5 protein Cwf20
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 290

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 12/35 (34%), Positives = 23/35 (65%)
 Frame = +2

Query: 221 SYTATRHRHSRLRSTLGLSNQSVRRLKRREDLWQS 325
           S+  T  +H+R + ++  + +S +RLKR+ DL +S
Sbjct: 25  SFDPTLFQHARRKLSVDSTKKSPKRLKRQVDLQKS 59


>SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit
           Cdc21|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 11/38 (28%), Positives = 22/38 (57%)
 Frame = +1

Query: 133 SQPYERSNKRQCESRARNVTRECLQQTPVLLHSNSPST 246
           SQ   R+N+ +   RA + +RE +  +P+   ++SP +
Sbjct: 4   SQQSGRANELRTPGRANSSSREAVDSSPLFFPASSPGS 41


>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 13/40 (32%), Positives = 24/40 (60%)
 Frame = +1

Query: 211 TPVLLHSNSPSTFTASKHSWTIKSISTSTQTARGSLAKRP 330
           TPV + S+S S+FT S +S  + +  ++T T   +++  P
Sbjct: 255 TPVTVSSSSLSSFTPS-YSTNLTTTGSTTTTGSATVSSSP 293


>SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 973

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 15/43 (34%), Positives = 27/43 (62%)
 Frame = +1

Query: 280 SISTSTQTARGSLAKRPTTLGSLFVGKQSTEMSSNKYKILVIN 408
           +++T++ T+ G++ +    + SLF G  S   SSN ++ILV N
Sbjct: 809 TVATASGTSTGTVLQ---VVPSLFPGCNSKCTSSNAFRILVEN 848


>SPAC6G10.07 |||nuclear cap-binding complex large subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 780

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = -1

Query: 90  MNEELYPCLWGASYLAQVLLNTP 22
           +++E  P +WG ++L  +L+N P
Sbjct: 163 ISKETKPSVWGDNFLRIILINLP 185


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,360,709
Number of Sequences: 5004
Number of extensions: 45020
Number of successful extensions: 152
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)