Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0002_M12
(612 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z22179-1|CAA80169.1| 254|Caenorhabditis elegans Hypothetical pr... 36 0.017
U97189-4|AAC48167.3| 2322|Caenorhabditis elegans Suppressor with... 32 0.28
U97189-3|AAT68901.1| 2019|Caenorhabditis elegans Suppressor with... 32 0.28
AF149821-1|AAD48773.1| 2322|Caenorhabditis elegans nonsense-medi... 32 0.28
Z79599-1|CAB01871.4| 493|Caenorhabditis elegans Hypothetical pr... 31 0.65
Z79597-3|CAB01862.4| 493|Caenorhabditis elegans Hypothetical pr... 31 0.65
AF014940-3|AAB63935.2| 232|Caenorhabditis elegans Hypothetical ... 29 2.0
AF014940-2|AAB63934.1| 232|Caenorhabditis elegans Hypothetical ... 29 2.6
Z81048-2|CAB02840.1| 553|Caenorhabditis elegans Hypothetical pr... 28 6.0
Z79605-7|CAB01908.1| 1440|Caenorhabditis elegans Hypothetical pr... 28 6.0
Z79604-7|CAB01901.1| 1440|Caenorhabditis elegans Hypothetical pr... 28 6.0
Z29967-1|CAA82854.1| 1440|Caenorhabditis elegans lin-15B protein. 28 6.0
U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical p... 28 6.0
U10413-1|AAA20089.1| 1440|Caenorhabditis elegans lin-15B protein... 28 6.0
U10412-1|AAA20088.1| 1440|Caenorhabditis elegans lin-15B protein... 28 6.0
U28941-5|AAM98026.2| 989|Caenorhabditis elegans Hypothetical pr... 27 8.0
AY314775-1|AAQ84882.1| 971|Caenorhabditis elegans methuselah-li... 27 8.0
>Z22179-1|CAA80169.1| 254|Caenorhabditis elegans Hypothetical
protein F58A4.1 protein.
Length = 254
Score = 36.3 bits (80), Expect = 0.017
Identities = 26/59 (44%), Positives = 31/59 (52%)
Frame = +1
Query: 211 TPVLLHSNSPSTFTASKHSWTIKSISTSTQTARGSLAKRPTTLGSLFVGKQSTEMSSNK 387
TP+ HS SPST T+ T S STST T+R + PTT S ST SS+K
Sbjct: 89 TPIPTHS-SPSTSTS-----TSTSTSTSTSTSRSTSTVTPTTRSSTTTTATSTPTSSSK 141
>U97189-4|AAC48167.3| 2322|Caenorhabditis elegans Suppressor with
morphological effecton genitalia protein 1, isoform a
protein.
Length = 2322
Score = 32.3 bits (70), Expect = 0.28
Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Frame = +1
Query: 121 RVKMSQPYERSNKRQCESRARNV--TRECLQQTPVLLHSNSPSTFTASKHSWTIKSISTS 294
R MS Y+ S +RQ ++ E + T LL +P+TF ++SW + + T
Sbjct: 662 RQSMSTVYQMSQERQQKTITSTSFGAEEFIIITNFLLKQATPTTFKKGQNSWMDEVLETF 721
Query: 295 TQTARGSLAKRPTTLGSLFVGK 360
TQ R +L K + + F+ K
Sbjct: 722 TQGCR-TLEKPDSYVPETFIEK 742
>U97189-3|AAT68901.1| 2019|Caenorhabditis elegans Suppressor with
morphological effecton genitalia protein 1, isoform b
protein.
Length = 2019
Score = 32.3 bits (70), Expect = 0.28
Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Frame = +1
Query: 121 RVKMSQPYERSNKRQCESRARNV--TRECLQQTPVLLHSNSPSTFTASKHSWTIKSISTS 294
R MS Y+ S +RQ ++ E + T LL +P+TF ++SW + + T
Sbjct: 662 RQSMSTVYQMSQERQQKTITSTSFGAEEFIIITNFLLKQATPTTFKKGQNSWMDEVLETF 721
Query: 295 TQTARGSLAKRPTTLGSLFVGK 360
TQ R +L K + + F+ K
Sbjct: 722 TQGCR-TLEKPDSYVPETFIEK 742
>AF149821-1|AAD48773.1| 2322|Caenorhabditis elegans
nonsense-mediated mRNA decay proteinSMG-1 protein.
Length = 2322
Score = 32.3 bits (70), Expect = 0.28
Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Frame = +1
Query: 121 RVKMSQPYERSNKRQCESRARNV--TRECLQQTPVLLHSNSPSTFTASKHSWTIKSISTS 294
R MS Y+ S +RQ ++ E + T LL +P+TF ++SW + + T
Sbjct: 662 RQSMSTVYQMSQERQQKTITSTSFGAEEFIIITNFLLKQATPTTFKKGQNSWMDEVLETF 721
Query: 295 TQTARGSLAKRPTTLGSLFVGK 360
TQ R +L K + + F+ K
Sbjct: 722 TQGCR-TLEKPDSYVPETFIEK 742
>Z79599-1|CAB01871.4| 493|Caenorhabditis elegans Hypothetical
protein C33A11.4 protein.
Length = 493
Score = 31.1 bits (67), Expect = 0.65
Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Frame = +1
Query: 211 TPVLLHSNSPSTFTASKHSWTIKSISTSTQTARGSLAKRPTTLGSLFVGK-QSTEMSSNK 387
+P L S+ PS FTA + + S++TST T L P L + K T M++
Sbjct: 57 SPTGLSSSGPSAFTAVSPTNSANSLTTSTATIYNRLMCIPKLLQEISNNKVLRTRMNNTA 116
Query: 388 YK 393
YK
Sbjct: 117 YK 118
>Z79597-3|CAB01862.4| 493|Caenorhabditis elegans Hypothetical
protein C33A11.4 protein.
Length = 493
Score = 31.1 bits (67), Expect = 0.65
Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Frame = +1
Query: 211 TPVLLHSNSPSTFTASKHSWTIKSISTSTQTARGSLAKRPTTLGSLFVGK-QSTEMSSNK 387
+P L S+ PS FTA + + S++TST T L P L + K T M++
Sbjct: 57 SPTGLSSSGPSAFTAVSPTNSANSLTTSTATIYNRLMCIPKLLQEISNNKVLRTRMNNTA 116
Query: 388 YK 393
YK
Sbjct: 117 YK 118
>AF014940-3|AAB63935.2| 232|Caenorhabditis elegans Hypothetical
protein W02D7.5 protein.
Length = 232
Score = 29.5 bits (63), Expect = 2.0
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Frame = +3
Query: 183 KRYQ-GVFATNTSPLTQQLAIDIHGFEALLDYQINQYVDSNGERIFGKASDDVRVIVC 353
K+Y G + TS L Q+ + GF+ L + + VDS G R+ DD +C
Sbjct: 163 KKYNIGGVLSETSSLANQIVLQKAGFKCLKELPYSAIVDSKGNRVL--RPDDGTTSLC 218
>AF014940-2|AAB63934.1| 232|Caenorhabditis elegans Hypothetical
protein W02D7.4 protein.
Length = 232
Score = 29.1 bits (62), Expect = 2.6
Identities = 20/85 (23%), Positives = 36/85 (42%)
Frame = +3
Query: 60 PKGKGTILHSFVMATDKSLNARENVAAIRALEQATMRIAREKRYQGVFATNTSPLTQQLA 239
P +I+H + + R +A T R ++ GV + TS L Q+
Sbjct: 125 PPNVNSIIHREIGSVAPQFT-RLGIATKMVTTNMTKRNLKKYNIGGVLSETTS-LANQIV 182
Query: 240 IDIHGFEALLDYQINQYVDSNGERI 314
++ GF+ L + + VDS G ++
Sbjct: 183 LEKAGFKCLKELPYSTIVDSKGNQV 207
>Z81048-2|CAB02840.1| 553|Caenorhabditis elegans Hypothetical
protein C41G7.3 protein.
Length = 553
Score = 27.9 bits (59), Expect = 6.0
Identities = 25/87 (28%), Positives = 37/87 (42%), Gaps = 11/87 (12%)
Frame = +1
Query: 154 NKRQCESRARNVTRECLQQTPVLLHSNSP--------STFTASKHSWTIKSISTSTQTAR 309
NK QC+ ARN +Q SN P S FT+ S T + S Q R
Sbjct: 294 NKEQCQE-ARNAVMSLMQSHQDKPASNPPDSGFSTPGSPFTSDSSSTTPEKRGNSRQYHR 352
Query: 310 GSLAKRPTTLGSL---FVGKQSTEMSS 381
GS +P + +L F+ K+ +++
Sbjct: 353 GSFRDQPKVMLALTPQFIDKEHCRLAA 379
>Z79605-7|CAB01908.1| 1440|Caenorhabditis elegans Hypothetical
protein ZK662.4 protein.
Length = 1440
Score = 27.9 bits (59), Expect = 6.0
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -3
Query: 73 PLPLGSIVSSTGPSKYAKNVIILA 2
P+P + SS GPS Y + +++LA
Sbjct: 754 PVPNRTTASSQGPSSYPRKIVVLA 777
>Z79604-7|CAB01901.1| 1440|Caenorhabditis elegans Hypothetical
protein ZK662.4 protein.
Length = 1440
Score = 27.9 bits (59), Expect = 6.0
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -3
Query: 73 PLPLGSIVSSTGPSKYAKNVIILA 2
P+P + SS GPS Y + +++LA
Sbjct: 754 PVPNRTTASSQGPSSYPRKIVVLA 777
>Z29967-1|CAA82854.1| 1440|Caenorhabditis elegans lin-15B protein.
Length = 1440
Score = 27.9 bits (59), Expect = 6.0
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -3
Query: 73 PLPLGSIVSSTGPSKYAKNVIILA 2
P+P + SS GPS Y + +++LA
Sbjct: 754 PVPNRTTASSQGPSSYPRKIVVLA 777
>U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical
protein T19D12.1 protein.
Length = 1844
Score = 27.9 bits (59), Expect = 6.0
Identities = 17/50 (34%), Positives = 27/50 (54%)
Frame = +1
Query: 235 SPSTFTASKHSWTIKSISTSTQTARGSLAKRPTTLGSLFVGKQSTEMSSN 384
+PST +++ S + +SI +ST GS PT + G ST+ +SN
Sbjct: 1561 NPSTSSSTSGSSSTQSIPSSTAANTGSSTSGPTV--ATTQGSSSTQTNSN 1608
>U10413-1|AAA20089.1| 1440|Caenorhabditis elegans lin-15B protein
protein.
Length = 1440
Score = 27.9 bits (59), Expect = 6.0
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -3
Query: 73 PLPLGSIVSSTGPSKYAKNVIILA 2
P+P + SS GPS Y + +++LA
Sbjct: 754 PVPNRTTASSQGPSSYPRKIVVLA 777
>U10412-1|AAA20088.1| 1440|Caenorhabditis elegans lin-15B protein
protein.
Length = 1440
Score = 27.9 bits (59), Expect = 6.0
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -3
Query: 73 PLPLGSIVSSTGPSKYAKNVIILA 2
P+P + SS GPS Y + +++LA
Sbjct: 754 PVPNRTTASSQGPSSYPRKIVVLA 777
>U28941-5|AAM98026.2| 989|Caenorhabditis elegans Hypothetical
protein F31D5.4 protein.
Length = 989
Score = 27.5 bits (58), Expect = 8.0
Identities = 18/50 (36%), Positives = 24/50 (48%)
Frame = +1
Query: 229 SNSPSTFTASKHSWTIKSISTSTQTARGSLAKRPTTLGSLFVGKQSTEMS 378
S+S S T++ S S TST TAR + PTT + + ST S
Sbjct: 212 SSSTSRSTSTPSSTEASSTVTSTTTARTTTTMIPTTPTTTTIASTSTVTS 261
>AY314775-1|AAQ84882.1| 971|Caenorhabditis elegans methuselah-like
protein MTH-2 protein.
Length = 971
Score = 27.5 bits (58), Expect = 8.0
Identities = 18/50 (36%), Positives = 24/50 (48%)
Frame = +1
Query: 229 SNSPSTFTASKHSWTIKSISTSTQTARGSLAKRPTTLGSLFVGKQSTEMS 378
S+S S T++ S S TST TAR + PTT + + ST S
Sbjct: 194 SSSTSRSTSTPSSTEASSTVTSTTTARTTTTMIPTTPTTTTIASTSTVTS 243
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,882,109
Number of Sequences: 27780
Number of extensions: 248735
Number of successful extensions: 744
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 717
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 743
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1321669750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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