Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0002_M11
(596 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_02_0356 + 7742926-7742937,7743008-7743040,7743704-7743758,774... 31 0.70
05_01_0329 - 2580083-2580115,2580787-2580864,2580986-2581078,258... 30 1.6
01_01_0363 + 2850954-2853675,2853819-2854225 29 2.1
12_02_0977 + 24999211-25000275,25000375-25000521,25000805-25001179 28 4.9
11_08_0079 + 28189782-28189907,28190445-28190553,28190876-281909... 28 4.9
08_02_0009 + 11216532-11218687,11220727-11225998 28 6.5
08_02_0003 + 11180421-11180757,11180773-11185715 28 6.5
08_02_0002 + 11173365-11173512,11173528-11178470 28 6.5
08_01_0501 + 4345522-4345720,4346598-4347167,4347294-4347366,435... 28 6.5
03_02_0495 - 8879612-8880283,8880369-8880608,8880713-8880775,888... 28 6.5
>09_02_0356 +
7742926-7742937,7743008-7743040,7743704-7743758,
7744137-7745530
Length = 497
Score = 31.1 bits (67), Expect = 0.70
Identities = 16/42 (38%), Positives = 23/42 (54%)
Frame = +3
Query: 183 YHNQCL*YCERDKTHSDLKIVKEGTCEEAESLRLYLHICPGL 308
YH++ L CE DK + + + +G E A +LR YL GL
Sbjct: 101 YHHRSLDRCELDKLAALRRALPDGDDERASTLRRYLAAIAGL 142
>05_01_0329 -
2580083-2580115,2580787-2580864,2580986-2581078,
2581209-2581326,2583350-2583440,2585167-2585207,
2585854-2585981,2586078-2586353,2587318-2587472,
2587557-2587700,2587991-2588567
Length = 577
Score = 29.9 bits (64), Expect = 1.6
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -3
Query: 492 LP*AIPSIPQTCLISRVQIHGCISATLTSWHSPRCII 382
LP +P +P TCL R +H S+T T H+ + ++
Sbjct: 198 LPTLLPCVPDTCLTDRNLLHIRESSTKTVLHAAKFVV 234
>01_01_0363 + 2850954-2853675,2853819-2854225
Length = 1042
Score = 29.5 bits (63), Expect = 2.1
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = -3
Query: 432 GCISATLTSWHSPRCIISRDGGNGRAHSSEHLLGLSVP 319
G S TLTSW+S + +G H ++GLS+P
Sbjct: 31 GLSSRTLTSWNSSTSFCNWEGVKCSRHRPTRVVGLSLP 68
>12_02_0977 + 24999211-25000275,25000375-25000521,25000805-25001179
Length = 528
Score = 28.3 bits (60), Expect = 4.9
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = -3
Query: 402 HSPRCIISRDGGNGRAHSSEHLLGLSVPVCATDRGIYE 289
H + +RDGG G S + G+ V A D G YE
Sbjct: 132 HGGNEVAARDGGGGDVSSDDEEYGIYDDVTANDDGGYE 169
>11_08_0079 +
28189782-28189907,28190445-28190553,28190876-28190958,
28191500-28191562,28191658-28192854,28193247-28193310,
28193338-28193426,28194404-28194463,28195442-28195547,
28196057-28196069,28196940-28197111
Length = 693
Score = 28.3 bits (60), Expect = 4.9
Identities = 21/68 (30%), Positives = 26/68 (38%)
Frame = -3
Query: 360 RAHSSEHLLGLSVPVCATDRGIYEGTDARTRLPHTYPLSRFSDRCASCPSRNTRGTGCGK 181
R H+ + L P AT G Y T+ R P T PL S +G G
Sbjct: 4 RQHALLRRISLPKPPAATGIGCYYATEPEGRKPKTAPLQ--SRGMVDRFRLRAKGGDGGN 61
Query: 180 SCRLIRRS 157
C +RRS
Sbjct: 62 GCISLRRS 69
>08_02_0009 + 11216532-11218687,11220727-11225998
Length = 2475
Score = 27.9 bits (59), Expect = 6.5
Identities = 14/53 (26%), Positives = 26/53 (49%)
Frame = +2
Query: 2 NSPRVMTETRYFVP*TITYNEYTRYISDRRVRKYTPQQSLPSSCACARNLRPD 160
N + T+ RYF+ + + ++ R VR+Y P+++ +C C PD
Sbjct: 1470 NHNNIRTKKRYFLRRS---DNRAPFLHKRNVRRYNPKKTYDKTCRCFICNSPD 1519
>08_02_0003 + 11180421-11180757,11180773-11185715
Length = 1759
Score = 27.9 bits (59), Expect = 6.5
Identities = 14/53 (26%), Positives = 26/53 (49%)
Frame = +2
Query: 2 NSPRVMTETRYFVP*TITYNEYTRYISDRRVRKYTPQQSLPSSCACARNLRPD 160
N + T+ RYF+ + + ++ R VR+Y P+++ +C C PD
Sbjct: 754 NHNNIRTKKRYFLRRS---DNRAPFLHKRNVRRYNPKKTYDKTCRCFICNSPD 803
>08_02_0002 + 11173365-11173512,11173528-11178470
Length = 1696
Score = 27.9 bits (59), Expect = 6.5
Identities = 14/53 (26%), Positives = 26/53 (49%)
Frame = +2
Query: 2 NSPRVMTETRYFVP*TITYNEYTRYISDRRVRKYTPQQSLPSSCACARNLRPD 160
N + T+ RYF+ + + ++ R VR+Y P+++ +C C PD
Sbjct: 691 NHNNIRTKKRYFLRRS---DNRAPFLHKRNVRRYNPKKTYDKTCRCFICNSPD 740
>08_01_0501 +
4345522-4345720,4346598-4347167,4347294-4347366,
4351133-4353092,4353465-4353840,4353932-4354326,
4354597-4354765,4355444-4355518,4357699-4357826,
4357988-4358213,4358290-4358417,4358505-4358768
Length = 1520
Score = 27.9 bits (59), Expect = 6.5
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = +2
Query: 386 IHRGECQEVKVADIQPCICTREIKQVCGIDG 478
IHR ++++ P +C ++K +CGI+G
Sbjct: 777 IHRMGPNDIEILGAIPSLCFLKLKTMCGING 807
>03_02_0495 -
8879612-8880283,8880369-8880608,8880713-8880775,
8881510-8881620
Length = 361
Score = 27.9 bits (59), Expect = 6.5
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = -3
Query: 450 SRVQIHGCISATLTSWHS 397
+RV+ H CIS+++ WHS
Sbjct: 296 ARVKKHACISSSIIGWHS 313
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,062,864
Number of Sequences: 37544
Number of extensions: 386572
Number of successful extensions: 1353
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1325
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1352
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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