Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0002_M10
(507 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr 2|||M... 273 9e-75
SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein Ubi2|... 153 1e-38
SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein Ubi1|Schiz... 153 1e-38
SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein Ubi3|Schi... 152 3e-38
SPAC589.10c |||ribomal-ubiquitin fusion protein Ubi5|Schizosacch... 152 3e-38
SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like pro... 92 5e-20
SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase Ubp6|Schizosacc... 45 6e-06
SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces pomb... 44 2e-05
SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyc... 42 4e-05
SPAC144.10c |gwt1|mug59|pig-W|Schizosaccharomyces pombe|chr 1|||... 28 0.70
SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomy... 27 1.6
SPBC31E1.03 |hub1|ubl4|ubiquitin-like protein modifier Hub1|Schi... 26 2.8
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein... 26 3.7
SPAC25G10.02 |cce1|ydc2|mitochondrial cruciform cutting endonucl... 25 4.9
SPBC2F12.09c |atf21||transcription factor Atf21|Schizosaccharomy... 25 8.6
SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5 |Sc... 25 8.6
>SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 382
Score = 273 bits (670), Expect = 9e-75
Identities = 134/143 (93%), Positives = 139/143 (97%)
Frame = +3
Query: 78 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 257
MQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 258 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIHD*EGIPPDQQRLI 437
IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTI+NVK+KI D EGIPPDQQRLI
Sbjct: 61 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLI 120
Query: 438 LAGKQLEDGRTLSDYNIQKESTL 506
AGKQLEDGRTLSDYNIQKESTL
Sbjct: 121 FAGKQLEDGRTLSDYNIQKESTL 143
Score = 273 bits (670), Expect = 9e-75
Identities = 134/143 (93%), Positives = 139/143 (97%)
Frame = +3
Query: 78 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 257
MQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 77 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 136
Query: 258 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIHD*EGIPPDQQRLI 437
IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTI+NVK+KI D EGIPPDQQRLI
Sbjct: 137 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLI 196
Query: 438 LAGKQLEDGRTLSDYNIQKESTL 506
AGKQLEDGRTLSDYNIQKESTL
Sbjct: 197 FAGKQLEDGRTLSDYNIQKESTL 219
Score = 273 bits (670), Expect = 9e-75
Identities = 134/143 (93%), Positives = 139/143 (97%)
Frame = +3
Query: 78 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 257
MQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 153 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 212
Query: 258 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIHD*EGIPPDQQRLI 437
IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTI+NVK+KI D EGIPPDQQRLI
Sbjct: 213 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLI 272
Query: 438 LAGKQLEDGRTLSDYNIQKESTL 506
AGKQLEDGRTLSDYNIQKESTL
Sbjct: 273 FAGKQLEDGRTLSDYNIQKESTL 295
Score = 273 bits (670), Expect = 9e-75
Identities = 134/143 (93%), Positives = 139/143 (97%)
Frame = +3
Query: 78 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 257
MQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 229 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 288
Query: 258 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIHD*EGIPPDQQRLI 437
IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTI+NVK+KI D EGIPPDQQRLI
Sbjct: 289 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLI 348
Query: 438 LAGKQLEDGRTLSDYNIQKESTL 506
AGKQLEDGRTLSDYNIQKESTL
Sbjct: 349 FAGKQLEDGRTLSDYNIQKESTL 371
Score = 153 bits (371), Expect = 1e-38
Identities = 73/77 (94%), Positives = 77/77 (100%)
Frame = +3
Query: 78 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 257
MQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 305 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 364
Query: 258 IQKESTLHLVLRLRGGM 308
IQKESTLHLVLRLRGG+
Sbjct: 365 IQKESTLHLVLRLRGGL 381
>SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein
Ubi2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 153 bits (371), Expect = 1e-38
Identities = 76/88 (86%), Positives = 82/88 (93%), Gaps = 1/88 (1%)
Frame = +3
Query: 78 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 257
MQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 258 IQKESTLHLVLRLRGG-MQIFVKTLTGK 338
IQKESTLHLVLRLRGG ++ +K L K
Sbjct: 61 IQKESTLHLVLRLRGGIIEPSLKALASK 88
Score = 125 bits (301), Expect = 4e-30
Identities = 61/67 (91%), Positives = 63/67 (94%)
Frame = +3
Query: 306 MQIFVKTLTGKTITLEVEPSDTIENVKAKIHD*EGIPPDQQRLILAGKQLEDGRTLSDYN 485
MQIFVKTLTGKTITLEVE SDTI+NVK+KI D EGIPPDQQRLI AGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 486 IQKESTL 506
IQKESTL
Sbjct: 61 IQKESTL 67
>SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein
Ubi1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 153 bits (371), Expect = 1e-38
Identities = 76/88 (86%), Positives = 82/88 (93%), Gaps = 1/88 (1%)
Frame = +3
Query: 78 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 257
MQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 258 IQKESTLHLVLRLRGG-MQIFVKTLTGK 338
IQKESTLHLVLRLRGG ++ +K L K
Sbjct: 61 IQKESTLHLVLRLRGGIIEPSLKALASK 88
Score = 125 bits (301), Expect = 4e-30
Identities = 61/67 (91%), Positives = 63/67 (94%)
Frame = +3
Query: 306 MQIFVKTLTGKTITLEVEPSDTIENVKAKIHD*EGIPPDQQRLILAGKQLEDGRTLSDYN 485
MQIFVKTLTGKTITLEVE SDTI+NVK+KI D EGIPPDQQRLI AGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 486 IQKESTL 506
IQKESTL
Sbjct: 61 IQKESTL 67
>SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein
Ubi3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 152 bits (369), Expect = 3e-38
Identities = 73/76 (96%), Positives = 76/76 (100%)
Frame = +3
Query: 78 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 257
MQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 258 IQKESTLHLVLRLRGG 305
IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
Score = 125 bits (301), Expect = 4e-30
Identities = 61/67 (91%), Positives = 63/67 (94%)
Frame = +3
Query: 306 MQIFVKTLTGKTITLEVEPSDTIENVKAKIHD*EGIPPDQQRLILAGKQLEDGRTLSDYN 485
MQIFVKTLTGKTITLEVE SDTI+NVK+KI D EGIPPDQQRLI AGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 486 IQKESTL 506
IQKESTL
Sbjct: 61 IQKESTL 67
>SPAC589.10c |||ribomal-ubiquitin fusion protein
Ubi5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 152 bits (369), Expect = 3e-38
Identities = 73/76 (96%), Positives = 76/76 (100%)
Frame = +3
Query: 78 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 257
MQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 258 IQKESTLHLVLRLRGG 305
IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
Score = 125 bits (301), Expect = 4e-30
Identities = 61/67 (91%), Positives = 63/67 (94%)
Frame = +3
Query: 306 MQIFVKTLTGKTITLEVEPSDTIENVKAKIHD*EGIPPDQQRLILAGKQLEDGRTLSDYN 485
MQIFVKTLTGKTITLEVE SDTI+NVK+KI D EGIPPDQQRLI AGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 486 IQKESTL 506
IQKESTL
Sbjct: 61 IQKESTL 67
>SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like
protein modifier Ned8|Schizosaccharomyces pombe|chr
2|||Manual
Length = 78
Score = 91.9 bits (218), Expect = 5e-20
Identities = 40/76 (52%), Positives = 56/76 (73%)
Frame = +3
Query: 78 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 257
M I VKTLTGK I L+++ +D + +K ++++KEGIPP QQRLI+AGKQ+ D + Y+
Sbjct: 1 MLIKVKTLTGKEIELDIDPNDKVSRIKERVEEKEGIPPSQQRLIYAGKQMADDKNAESYH 60
Query: 258 IQKESTLHLVLRLRGG 305
++ S LHLVL LRGG
Sbjct: 61 LEGGSVLHLVLALRGG 76
Score = 72.9 bits (171), Expect = 2e-14
Identities = 32/67 (47%), Positives = 46/67 (68%)
Frame = +3
Query: 306 MQIFVKTLTGKTITLEVEPSDTIENVKAKIHD*EGIPPDQQRLILAGKQLEDGRTLSDYN 485
M I VKTLTGK I L+++P+D + +K ++ + EGIPP QQRLI AGKQ+ D + Y+
Sbjct: 1 MLIKVKTLTGKEIELDIDPNDKVSRIKERVEEKEGIPPSQQRLIYAGKQMADDKNAESYH 60
Query: 486 IQKESTL 506
++ S L
Sbjct: 61 LEGGSVL 67
>SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase
Ubp6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 467
Score = 45.2 bits (102), Expect = 6e-06
Identities = 20/58 (34%), Positives = 36/58 (62%)
Frame = +3
Query: 333 GKTITLEVEPSDTIENVKAKIHD*EGIPPDQQRLILAGKQLEDGRTLSDYNIQKESTL 506
GK LE+EP++T +K +++ +PP++Q++I+ G QL+D L I+ +TL
Sbjct: 10 GKKYDLEIEPNETGSTLKHQLYSLTQVPPERQKVIVKGGQLKDDVLLGSVGIKPNATL 67
Score = 40.7 bits (91), Expect = 1e-04
Identities = 19/58 (32%), Positives = 33/58 (56%)
Frame = +3
Query: 105 GKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTL 278
GK LE+E ++T +K ++ +PP++Q++I G QL+D L I+ +TL
Sbjct: 10 GKKYDLEIEPNETGSTLKHQLYSLTQVPPERQKVIVKGGQLKDDVLLGSVGIKPNATL 67
>SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 368
Score = 43.6 bits (98), Expect = 2e-05
Identities = 18/54 (33%), Positives = 35/54 (64%)
Frame = +3
Query: 108 KTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKE 269
K + +V A I +K KIQ ++ ++Q+LI++G+ L D +T+ +YNI+++
Sbjct: 12 KFVISDVSADTKISELKEKIQTQQNYEVERQKLIYSGRILADDKTVGEYNIKEQ 65
>SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 354
Score = 42.3 bits (95), Expect = 4e-05
Identities = 21/73 (28%), Positives = 39/73 (53%)
Frame = +3
Query: 78 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 257
+ + +K + + V++ ++ +K I I ++QRLI+AG+ L+D +L Y
Sbjct: 4 ISLTIKAANDQKYAVTVDSESSVLALKEAIAPVADIEKERQRLIYAGRVLKDEESLKTYK 63
Query: 258 IQKESTLHLVLRL 296
IQ ++HLV L
Sbjct: 64 IQDGHSIHLVKTL 76
Score = 32.3 bits (70), Expect = 0.043
Identities = 17/62 (27%), Positives = 31/62 (50%)
Frame = +3
Query: 306 MQIFVKTLTGKTITLEVEPSDTIENVKAKIHD*EGIPPDQQRLILAGKQLEDGRTLSDYN 485
+ + +K + + V+ ++ +K I I ++QRLI AG+ L+D +L Y
Sbjct: 4 ISLTIKAANDQKYAVTVDSESSVLALKEAIAPVADIEKERQRLIYAGRVLKDEESLKTYK 63
Query: 486 IQ 491
IQ
Sbjct: 64 IQ 65
>SPAC144.10c |gwt1|mug59|pig-W|Schizosaccharomyces pombe|chr
1|||Manual
Length = 459
Score = 28.3 bits (60), Expect = 0.70
Identities = 17/60 (28%), Positives = 32/60 (53%)
Frame = -2
Query: 194 VRWDAFFVLDLGFYVLDCI*GLNFQGYSFTCKSLNENLHCDIFFLNLAKFFFITNTEKVT 15
V W++F +L LGF + +N+Q + + ++ N + F+ L FFF + +KV+
Sbjct: 191 VLWNSFILLILGFARMFLTKSINYQEH-VSEYGMHWNFFFTLGFMALGVFFFRRSLKKVS 249
>SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 603
Score = 27.1 bits (57), Expect = 1.6
Identities = 21/90 (23%), Positives = 40/90 (44%), Gaps = 2/90 (2%)
Frame = +3
Query: 81 QIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD--Y 254
+I V T+ K +V + T+ +K I P D+ +LI AG+ L + L + +
Sbjct: 5 RIRVTTVDQKVGIFQVPRTKTVLELKELIAVTFEAPADRLKLIHAGRVLRNETPLEEILH 64
Query: 255 NIQKESTLHLVLRLRGGMQIFVKTLTGKTI 344
+ T HLV+ + + + T ++
Sbjct: 65 DATDLVTFHLVIAVFNSTSTTLPSATSSSV 94
>SPBC31E1.03 |hub1|ubl4|ubiquitin-like protein modifier
Hub1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 73
Score = 26.2 bits (55), Expect = 2.8
Identities = 16/67 (23%), Positives = 29/67 (43%)
Frame = +3
Query: 306 MQIFVKTLTGKTITLEVEPSDTIENVKAKIHD*EGIPPDQQRLILAGKQLEDGRTLSDYN 485
+++ GK + ++ P DT+ + K + G P + L +D TL+DY
Sbjct: 2 IEVLCNDRLGKKVRVKCMPDDTVGDFKKLVAAQTGTDPRRIVLKKWHSVFKDNITLADYE 61
Query: 486 IQKESTL 506
I +L
Sbjct: 62 IHDGMSL 68
>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 25.8 bits (54), Expect = 3.7
Identities = 14/48 (29%), Positives = 23/48 (47%)
Frame = -3
Query: 232 SSSCFPAKISLCWSGGMPSLSWILAFTFSIVSEASTSRVIVLPVRVLT 89
++S P+ S + G P + S++S AS S VLP ++T
Sbjct: 204 NTSMIPSSSSFTTTTGSPYYNTSSFLPSSVISSASLSSSSVLPTSIIT 251
>SPAC25G10.02 |cce1|ydc2|mitochondrial cruciform cutting
endonuclease Cce1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 258
Score = 25.4 bits (53), Expect = 4.9
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +1
Query: 229 KTAAPFLTTISRKNLPSTWCSVLEVECKY 315
K PFL ++S K+ S W SVL + +
Sbjct: 157 KIQYPFLLSLSPKSTYSYWASVLNTKASF 185
>SPBC2F12.09c |atf21||transcription factor Atf21|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 355
Score = 24.6 bits (51), Expect = 8.6
Identities = 18/64 (28%), Positives = 25/64 (39%), Gaps = 3/64 (4%)
Frame = +3
Query: 99 LTGKTITLEVEASDTIENVKAKIQDKEGIP---PDQQRLIFAGKQLEDGRTLSDYNIQKE 269
L G T EV T+ + + +G P P + I A +G TL+ YN
Sbjct: 94 LKGPERTSEVSLPQTVNLSEISNNNDKGQPTNTPPVRSTIVAPSLYSEGSTLNHYNNGSH 153
Query: 270 STLH 281
LH
Sbjct: 154 QVLH 157
>SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 632
Score = 24.6 bits (51), Expect = 8.6
Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +3
Query: 231 DGRTLSDYNIQKESTLHLVLRLR-GGMQIFVKTLTGKTITL 350
DG TL++ N HL++RL+ ++ + +T+TL
Sbjct: 432 DGETLNEINTNNPEREHLIVRLKVDSQKLKIIVEQSQTLTL 472
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,163,392
Number of Sequences: 5004
Number of extensions: 44626
Number of successful extensions: 149
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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