Samia BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_M10
         (507 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L36067-1|AAA29362.1|  229|Anopheles gambiae polyubiquitin protein.    281   1e-77
AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.    23   5.9  
AB090815-2|BAC57906.1|  973|Anopheles gambiae reverse transcript...    23   5.9  

>L36067-1|AAA29362.1|  229|Anopheles gambiae polyubiquitin protein.
          Length = 229

 Score =  281 bits (688), Expect = 1e-77
 Identities = 139/143 (97%), Positives = 139/143 (97%)
 Frame = +3

Query: 78  MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 257
           MQIFVKTLTGKTITLEVE SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 258 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIHD*EGIPPDQQRLI 437
           IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKI D EGIPPDQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 120

Query: 438 LAGKQLEDGRTLSDYNIQKESTL 506
            AGKQLEDGRTLSDYNIQKESTL
Sbjct: 121 FAGKQLEDGRTLSDYNIQKESTL 143



 Score =  281 bits (688), Expect = 1e-77
 Identities = 139/143 (97%), Positives = 139/143 (97%)
 Frame = +3

Query: 78  MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 257
           MQIFVKTLTGKTITLEVE SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 77  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 136

Query: 258 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIHD*EGIPPDQQRLI 437
           IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKI D EGIPPDQQRLI
Sbjct: 137 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 196

Query: 438 LAGKQLEDGRTLSDYNIQKESTL 506
            AGKQLEDGRTLSDYNIQKESTL
Sbjct: 197 FAGKQLEDGRTLSDYNIQKESTL 219



 Score =  154 bits (373), Expect = 2e-39
 Identities = 75/76 (98%), Positives = 75/76 (98%)
 Frame = +3

Query: 78  MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 257
           MQIFVKTLTGKTITLEVE SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 153 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 212

Query: 258 IQKESTLHLVLRLRGG 305
           IQKESTLHLVLRLRGG
Sbjct: 213 IQKESTLHLVLRLRGG 228


>AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.
          Length = 1133

 Score = 23.0 bits (47), Expect = 5.9
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = +3

Query: 174 KEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 296
           K   P  Q R IF G+ +++   +    +Q++   HL++ L
Sbjct: 588 KREFPDLQNRTIFTGRFVKELYDVRSGCVQEQDGTHLLMNL 628


>AB090815-2|BAC57906.1|  973|Anopheles gambiae reverse transcriptase
           protein.
          Length = 973

 Score = 23.0 bits (47), Expect = 5.9
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = -3

Query: 310 CIPPLRRSTKWRVDSFWIL*SERV 239
           C P L  S  WRV + + L   RV
Sbjct: 174 CSPALASSMNWRVSNAYTLSDHRV 197


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 537,964
Number of Sequences: 2352
Number of extensions: 11340
Number of successful extensions: 13
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 563,979
effective HSP length: 60
effective length of database: 422,859
effective search space used: 45668772
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)