Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0002_M09
(615 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC2D10.09 |||3-hydroxyisobutyryl-CoA hydrolase|Schizosaccharom... 51 1e-07
SPBC649.03 |rhp14||XP-A family homolog Rhp14|Schizosaccharomyces... 28 1.2
SPAC17D4.04 ||SPAC458.01|tRNA |Schizosaccharomyces pombe|chr 1||... 28 1.2
SPAC1002.04c |taf11||transcription factor TFIID complex subunit ... 27 2.2
SPAC343.14c |||translation initiation factor eIF2B|Schizosacchar... 27 2.2
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 27 2.8
SPBC11G11.04 |trs20||TRAPP complex subunit Trs20 |Schizosaccharo... 27 2.8
SPAPB17E12.04c |csn2||COP9/signalosome complex subunit Csn2 |Sch... 25 6.6
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch... 25 6.6
SPBC428.01c |nup107|SPBC582.11c|nucleoporin Nup107|Schizosacchar... 25 8.7
>SPBC2D10.09 |||3-hydroxyisobutyryl-CoA
hydrolase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 429
Score = 51.2 bits (117), Expect = 1e-07
Identities = 35/121 (28%), Positives = 60/121 (49%), Gaps = 6/121 (4%)
Frame = +3
Query: 111 INYCFAASTVEEIIERL-EKVNN-----EWSIKTLESLHQMCPGSLKITLRALQRGAQLD 272
IN CF + +II L E +N E++ T+++L+ P S+ +T R ++ A+
Sbjct: 286 INKCFCKNDTVDIIRALKEYASNTSALAEFAKSTVKTLYSKSPTSIAVTNRLIKSAAKWS 345
Query: 273 LGQCLKMEYRLACRATENHDFPEGVRALLIDKDNKPQWKPKTLAEVTDDYVESYFKKLPD 452
+ + ++ ++ + DF EGV A LI K P+W D +E+YF KLP
Sbjct: 346 ISEAFYYDHIVSYYMLKQPDFVEGVNAQLITKTKNPKWSKSHEYHFKD--LENYF-KLPS 402
Query: 453 D 455
+
Sbjct: 403 E 403
>SPBC649.03 |rhp14||XP-A family homolog Rhp14|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 289
Score = 27.9 bits (59), Expect = 1.2
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = +3
Query: 342 GVRALLID--KDNKPQWKPKTLAEVTDDYVESYFKKLPDDKELQFLEAK 482
G+ + +D K NK + +E+T DY+E F K+ D K LE K
Sbjct: 29 GIEEVHVDGAKVNKRKRTFDEQSEITKDYIEYDFSKIEDTKGGYLLEEK 77
>SPAC17D4.04 ||SPAC458.01|tRNA |Schizosaccharomyces pombe|chr
1|||Manual
Length = 654
Score = 27.9 bits (59), Expect = 1.2
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +3
Query: 174 NEWSIKTLESLHQMCPGSLKITLRALQRGAQLDLGQC 284
NEWS+KT LH L L+ L++G +L C
Sbjct: 257 NEWSLKTALGLHATQIKILMRGLQLLEKGGRLVYSTC 293
>SPAC1002.04c |taf11||transcription factor TFIID complex subunit
Taf11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 199
Score = 27.1 bits (57), Expect = 2.2
Identities = 13/52 (25%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Frame = +3
Query: 36 RRGGLAAGQIRRASGRV---SLAPNIKHINYCFAASTVEEIIERLEKVNNEW 182
RR L +++ + ++ S+ PN+ + F+ V EI+E K+ ++W
Sbjct: 112 RRANLNKTNVKKLANQILNQSVTPNVAIVISGFSKVFVGEIVELARKIQDQW 163
>SPAC343.14c |||translation initiation factor
eIF2B|Schizosaccharomyces pombe|chr 1|||Manual
Length = 393
Score = 27.1 bits (57), Expect = 2.2
Identities = 7/26 (26%), Positives = 20/26 (76%)
Frame = +3
Query: 132 STVEEIIERLEKVNNEWSIKTLESLH 209
S ++++I+ L+K+N + +++++ LH
Sbjct: 175 SGIQDVIDELDKINTDIEVQSMDHLH 200
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 26.6 bits (56), Expect = 2.8
Identities = 17/48 (35%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Frame = +3
Query: 99 NIKHINYCFAASTV-EEIIERLEKVNNEWSIKTLESLHQMCPGSLKIT 239
++++I AAS + EE++ER++ +E+ ++T ESL + LKIT
Sbjct: 938 SLRNIEQLQAASKLAEEMVERVKTEYDEYRLQTSESLEK---NHLKIT 982
>SPBC11G11.04 |trs20||TRAPP complex subunit Trs20
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 136
Score = 26.6 bits (56), Expect = 2.8
Identities = 10/36 (27%), Positives = 24/36 (66%)
Frame = +3
Query: 108 HINYCFAASTVEEIIERLEKVNNEWSIKTLESLHQM 215
H+N S+++ I+++L+ +N + +KT++ H+M
Sbjct: 34 HLNQFIVHSSLD-IVDQLQWTSNAFYMKTIDQFHEM 68
>SPAPB17E12.04c |csn2||COP9/signalosome complex subunit Csn2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 437
Score = 25.4 bits (53), Expect = 6.6
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = +3
Query: 99 NIKHINYCFAASTVEEIIERLEKVNNEWSIKTLESL 206
++K N A ++ I+E+ E NEW+ K L+ +
Sbjct: 40 SLKEENPESALTSFYSIVEKCEGEQNEWAFKALKQI 75
>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2609
Score = 25.4 bits (53), Expect = 6.6
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = -3
Query: 169 TFSNLSMISSTVEAAKQ*LMCLMLGARETLPEARRICPAAS 47
T ++L +S VEAA Q L L LP+ +CP+ S
Sbjct: 224 TNASLVELSRVVEAAIQKLSIKPLAFPNVLPQVLLLCPSIS 264
>SPBC428.01c |nup107|SPBC582.11c|nucleoporin
Nup107|Schizosaccharomyces pombe|chr 2|||Manual
Length = 794
Score = 25.0 bits (52), Expect = 8.7
Identities = 9/34 (26%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = +3
Query: 108 HINYC-FAASTVEEIIERLEKVNNEWSIKTLESL 206
H +C F + + EE++E + N W +L+ +
Sbjct: 234 HTAFCLFRSGSFEELLELCRRTGNHWRSASLQGI 267
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,328,936
Number of Sequences: 5004
Number of extensions: 43896
Number of successful extensions: 139
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -