Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_M08
         (472 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3A12.02 |||inorganic pyrophosphatase|Schizosaccharomyces pom...    27   1.9  
SPAPB1A10.12c |alo1||D-arabinono-1,4-lactone oxidase|Schizosacch...    25   5.8  
SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr 1|...    25   5.8  
SPAC20G4.05c |||UPF0061 family protein|Schizosaccharomyces pombe...    25   7.7  

>SPAC3A12.02 |||inorganic pyrophosphatase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 286

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
 Frame = -3

Query: 275 ISFF--IRVTAVCDVFSLLQYIDRWTSANYRIS 183
           ISFF  + +T+  D F+++  I RWT A   IS
Sbjct: 35  ISFFHDVPLTSDKDTFNMVTEIPRWTQAKCEIS 67


>SPAPB1A10.12c |alo1||D-arabinono-1,4-lactone
           oxidase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 461

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 18/54 (33%), Positives = 27/54 (50%)
 Frame = +3

Query: 66  KINMNSVRILIFVAICVMFVSTVTAWDFFKELEGVGQRVRDAIISAGPAIDVLQ 227
           K++    + L+FV  CV  V+      +FK     G ++  A+  AGP  DVLQ
Sbjct: 261 KLDSFVYQCLLFVGKCVNRVTPYLERFWFKC--HYGSKLGTALQVAGPGFDVLQ 312


>SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 809

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +2

Query: 281 FYNIRCPKELIVNNIIQEFK 340
           F+ I CP EL+++ +I+  K
Sbjct: 328 FFIIHCPNELVIDLVIENHK 347


>SPAC20G4.05c |||UPF0061 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 568

 Score = 24.6 bits (51), Expect = 7.7
 Identities = 11/43 (25%), Positives = 22/43 (51%)
 Frame = -3

Query: 272 SFFIRVTAVCDVFSLLQYIDRWTSANYRISHSLADTFKFFEKV 144
           S  + +   CD    LQY+++  ++   +  + A T + FEK+
Sbjct: 340 SALVELIGACDKVDDLQYMEQLHNSTDLLKKAFAYTSEVFEKI 382


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,695,471
Number of Sequences: 5004
Number of extensions: 31082
Number of successful extensions: 74
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 180421690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)