Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_M08
         (472 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            25   0.31 
AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          23   1.6  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       22   2.9  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    22   3.8  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   6.7  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   8.8  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   8.8  

>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 25.4 bits (53), Expect = 0.31
 Identities = 14/39 (35%), Positives = 17/39 (43%), Gaps = 2/39 (5%)
 Frame = +2

Query: 119 VCFNGDSVGLFQRT*RCRPESERCD--N*RWSSDRCTAK 229
           V FNGD   L +    C P  + CD  +      RCT K
Sbjct: 423 VAFNGDQYDLKKNLKVCLPPGQYCDVISGNLEKGRCTGK 461


>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 23.0 bits (47), Expect = 1.6
 Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = -3

Query: 206 TSANYRIS-HSLADTFKFFEKVPRCHR*NKHDANGDENQNSNR 81
           T   Y IS +SL    + F++   CH  ++++ +  E++NS R
Sbjct: 206 TCKKYAISSNSLGSRSRSFQRTSSCH--SRYEDSRHEDRNSYR 246


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +1

Query: 262 MKNDIHIL*Y*VPKGINCKQYHSRI*R 342
           +KN  H++ Y +PKGI+  +Y  RI R
Sbjct: 517 IKNVSHVINYDLPKGID--EYVHRIGR 541


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = +1

Query: 313 CKQYHSRI*RNIYYFYNPK 369
           C  Y +     IYY YNP+
Sbjct: 42  CDYYQNLNLGEIYYIYNPR 60


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.0 bits (42), Expect = 6.7
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -3

Query: 125 NKHDANGDENQNSNRVHVYFLF 60
           N H  N D ++ S  V V FL+
Sbjct: 317 NYHHRNADTHEMSEWVKVVFLY 338


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 20.6 bits (41), Expect = 8.8
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +3

Query: 69  INMNSVRILIFVAICVMFV 125
           +NM SV + IF  IC+M +
Sbjct: 270 LNMASVFMRIFNLICMMLL 288


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 20.6 bits (41), Expect = 8.8
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +3

Query: 69  INMNSVRILIFVAICVMFV 125
           +NM SV + IF  IC+M +
Sbjct: 238 LNMASVFMRIFNLICMMLL 256


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,861
Number of Sequences: 438
Number of extensions: 2090
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12682287
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)