Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_M06
         (680 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    30   0.018
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           30   0.018
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   3.6  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   6.2  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   6.2  

>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 30.3 bits (65), Expect = 0.018
 Identities = 17/43 (39%), Positives = 25/43 (58%)
 Frame = +1

Query: 13  TRVNFIKMVKVDIKYTKLFINNEWVDAVSKKTFPTINPQDESV 141
           T  N IKM KV I +   F+NN  V  V+   +P +NP ++S+
Sbjct: 481 TTTNDIKMQKVLIDFWVSFVNN-GVPNVNSVQWPRLNPNEKSL 522


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 30.3 bits (65), Expect = 0.018
 Identities = 17/43 (39%), Positives = 25/43 (58%)
 Frame = +1

Query: 13  TRVNFIKMVKVDIKYTKLFINNEWVDAVSKKTFPTINPQDESV 141
           T  N IKM KV I +   F+NN  V  V+   +P +NP ++S+
Sbjct: 481 TTTNDIKMQKVLIDFWVSFVNN-GVPNVNSVQWPRLNPNEKSL 522


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = +1

Query: 16  RVNFIKMVKVDIKYTKLFINNEWVDAVSKKTF 111
           R+  +  + V      LFINN +++ V   TF
Sbjct: 606 RITELSPLSVPDSVELLFINNNYINLVRPNTF 637


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +1

Query: 361 VLWASGIVRYYAGKADKI 414
           + WA G+ R+Y G  D I
Sbjct: 466 ISWAFGVNRFYDGIRDMI 483


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +1

Query: 361 VLWASGIVRYYAGKADKI 414
           + WA G+ R+Y G  D I
Sbjct: 519 ISWAFGVNRFYDGIRDMI 536


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,727
Number of Sequences: 438
Number of extensions: 3716
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20708550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)