Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_M04
         (531 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0663 + 30713902-30714190,30714645-30715054,30715699-30716580     32   0.33 
07_03_1737 + 29137654-29137842,29137999-29138061,29138196-291382...    29   3.1  
04_01_0106 + 1102880-1105691,1105781-1105806                           27   7.1  
03_05_0456 - 24498212-24499581,24502660-24503071                       27   7.1  
01_05_0483 + 22618990-22619017,22619344-22619834                       27   7.1  
08_01_1016 - 10280918-10281171,10281319-10281460                       27   9.4  
07_01_0124 - 938612-940098,940643-940748                               27   9.4  
04_04_1033 - 30269639-30269734,30269838-30270257,30270450-302706...    27   9.4  
02_01_0507 - 3682383-3682703,3682830-3682970,3683071-3683147,368...    27   9.4  

>02_05_0663 + 30713902-30714190,30714645-30715054,30715699-30716580
          Length = 526

 Score = 31.9 bits (69), Expect = 0.33
 Identities = 22/62 (35%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
 Frame = -2

Query: 485 GTLRAVGSAGDDT---GPANKSAGEVVYYVAVQVGRDHHVELVRVRYHLHRAVVHDHLLE 315
           G L   G++G  T     A   AGE   YVA + G +  V L+   Y L  A V    L+
Sbjct: 25  GLLADAGASGPTTQALAAAQTDAGETALYVAAEAGSEEIVRLLIPLYDLEAATVRSR-LD 83

Query: 314 LD 309
           LD
Sbjct: 84  LD 85


>07_03_1737 +
           29137654-29137842,29137999-29138061,29138196-29138267,
           29138411-29138518,29138615-29138695,29138818-29138871,
           29138956-29139081,29139162-29139251,29139444-29139566,
           29139667-29139777,29139927-29140040,29140214-29140270,
           29140350-29140424,29140526-29140600
          Length = 445

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 18/73 (24%), Positives = 37/73 (50%)
 Frame = +3

Query: 150 TAAKSERIAKFAFDYAVKMGRKKVTAVHKANIMKLGDGLFLRSCEEMAKLYPRIQFEKMI 329
           TAA+  R     ++    +G+     V  A  M+ GD + ++  ++ AK+      E++ 
Sbjct: 7   TAAQKVRRCLGKYELGRAIGQGTFAKVRFAKNMETGDHVAIKILDK-AKVQKHRLVEQIR 65

Query: 330 VDNCTMQMVSNPN 368
            + CTM+++ +PN
Sbjct: 66  REICTMKLIQHPN 78


>04_01_0106 + 1102880-1105691,1105781-1105806
          Length = 945

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 13/33 (39%), Positives = 22/33 (66%)
 Frame = -2

Query: 383 HHVELVRVRYHLHRAVVHDHLLELDPGVQLRHL 285
           HH+EL+ ++  LH +V+  HL E++  + LR L
Sbjct: 763 HHLELLFMKGKLHESVIGCHLFEVN-RLSLREL 794


>03_05_0456 - 24498212-24499581,24502660-24503071
          Length = 593

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -3

Query: 313 WILGYSFAISSQLRRKSPSPSFMMFALWTA 224
           W+   S AI+  L     S SFM F +WTA
Sbjct: 522 WLPSASIAINVFLLGSIDSKSFMRFGIWTA 551


>01_05_0483 + 22618990-22619017,22619344-22619834
          Length = 172

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = -2

Query: 461 AGDDTGPANKSAGEVVYYVAVQVGRDHHVELVRVRYHLHR 342
           +GD + PA ++A E +  +A+Q G   ++ ++ V    HR
Sbjct: 127 SGDSSDPAAEAAAECLSKLALQKGSKDNISVIVVDLKAHR 166


>08_01_1016 - 10280918-10281171,10281319-10281460
          Length = 131

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
 Frame = -2

Query: 410 YVAVQVGRDHHVELVRVRYHLHRAVVH-DHLLELDPGVQLRHLFTTPKEESI 258
           + A    R H +    +R HLH   +H   L+E+    +L H    PK  +I
Sbjct: 21  WCAAAADRSHRITTAHLRPHLHVEELHGKKLMEIQVPRKLGHEVKVPKRMAI 72


>07_01_0124 - 938612-940098,940643-940748
          Length = 530

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 15/45 (33%), Positives = 26/45 (57%)
 Frame = +3

Query: 72  REQTEGEYSALEHESVPGVVECLKIITAAKSERIAKFAFDYAVKM 206
           R+  E  +S L   S   V +  KII A++S++IA+F    A+++
Sbjct: 293 RDIDEAAWSRLYSASKRCVAKGSKIIVASRSDKIARFGTTQALRV 337


>04_04_1033 -
           30269639-30269734,30269838-30270257,30270450-30270662,
           30271071-30271949
          Length = 535

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = +2

Query: 266 LPSEL*RDGEAVPQDPVREDDRGQLHDA 349
           L  E   DGE+    PVR+D   QLH A
Sbjct: 407 LDQEAAADGESSSMRPVRDDQDNQLHGA 434


>02_01_0507 -
           3682383-3682703,3682830-3682970,3683071-3683147,
           3683835-3683901
          Length = 201

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +2

Query: 32  REVPASRCRLHHHQRTDRRRILRSG 106
           R VPA+    H HQR  RR+ L +G
Sbjct: 94  RTVPAAGIGSHSHQRPHRRQALHAG 118


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,730,186
Number of Sequences: 37544
Number of extensions: 313071
Number of successful extensions: 955
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 927
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 955
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1178343540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)