Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_M03
         (537 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC222.16c |csn3|SPAC821.02c|COP9/signalosome complex subunit C...    27   1.3  
SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyc...    26   3.1  
SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces...    26   3.1  
SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription fact...    25   7.2  
SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase ki...    25   7.2  

>SPAC222.16c |csn3|SPAC821.02c|COP9/signalosome complex subunit Csn3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 334

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = -1

Query: 348 HVLPMQREEVSVQAGMTDDLRWIASLLTVLGIHWSIFYID 229
           +VLP++R  V  +  +   L+ + +L TV+  HWS F  D
Sbjct: 181 NVLPLKRHMVPYEEFLDAYLKDVNTLRTVIKEHWSRFLKD 220


>SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 581

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 14/54 (25%), Positives = 23/54 (42%)
 Frame = +3

Query: 321 PLHAALEGRDVIGRREHNGWKTIPQYGKYSLGNRYGTIMAYVIYIFSNNREAYW 482
           P+   +EG D+ G   H  W T      Y L + +GT   ++  I   ++   W
Sbjct: 90  PIFENVEGNDIDGSSYHGYWTT----NLYELNHHFGTKEEFMELIQELHKRDIW 139


>SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 844

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = +2

Query: 128 RLFLFSKSHLTSEDIEVKTQYCIEKSSKTR 217
           R+ +++K H+    + V   +CI K  KT+
Sbjct: 728 RIRVYAKKHVVKHGVSVCVSHCIAKLQKTK 757


>SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription factor
           Grt1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 648

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +3

Query: 276 WLSTVGRPSCRPAQIPLHA 332
           W   VGRPSC    IP+ A
Sbjct: 319 WSFCVGRPSCSRQDIPIPA 337


>SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase
           kinase Win1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1436

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = +1

Query: 451 ISSRTIVKLTGIKEDD 498
           ISS  I+K  GIKEDD
Sbjct: 166 ISSNRIIKSPGIKEDD 181


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,153,821
Number of Sequences: 5004
Number of extensions: 42772
Number of successful extensions: 100
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 222442660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)