Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_M03
         (537 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0184 + 6232429-6232515,6232634-6232751,6233198-6233286,623...    29   2.3  
09_02_0133 + 4707944-4708308,4708320-4708534,4708626-4708672,470...    28   4.1  
07_03_1564 + 27749899-27750166,27750431-27750507,27750923-277509...    28   5.4  
05_06_0254 - 26706830-26706943,26707063-26707193,26707330-267074...    28   5.4  
05_02_0065 - 6276439-6276462,6276716-6276781,6277035-6277100,627...    28   5.4  
09_02_0184 - 5485231-5485743                                           27   7.2  
03_01_0084 + 676538-676669,677828-677959,678085-678210,678820-67...    27   7.2  

>03_02_0184 +
           6232429-6232515,6232634-6232751,6233198-6233286,
           6233364-6233428,6233520-6233608,6234167-6234300,
           6234387-6235133
          Length = 442

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +1

Query: 250 VDSKNSQETGYPP*VVRHAGL-HRYLFTLH 336
           VD K+ Q     P + RHAGL H+ LF LH
Sbjct: 408 VDEKSKQHKTVQPPLRRHAGLHHQQLFQLH 437


>09_02_0133 +
           4707944-4708308,4708320-4708534,4708626-4708672,
           4708997-4709393,4710042-4710608,4710708-4710838,
           4711274-4711747
          Length = 731

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +3

Query: 432 IMAYVIYIFSNNREAYWN*RRRFRFVTNIPDG 527
           ++AY +Y  + N E  WN +  +   TNIPDG
Sbjct: 137 LLAYPLY--NPNGETRWNLKMPYETPTNIPDG 166


>07_03_1564 +
           27749899-27750166,27750431-27750507,27750923-27750950,
           27751117-27751261,27751351-27751429,27751515-27751633,
           27751732-27752073,27754807-27754896,27755730-27755955,
           27756398-27756784,27757176-27757496
          Length = 693

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 16/48 (33%), Positives = 21/48 (43%)
 Frame = -3

Query: 382 FQPLCSLRPITSRPSNAA*RGICAGRHDGRPTVDSQSLDCSWNPLVYI 239
           F   C +  +T R    A  G C     GR T++   L C  NPL Y+
Sbjct: 243 FHSTCKIANLTIR----AELGCCLLHRSGRLTIEECLLQCEQNPLDYL 286


>05_06_0254 -
           26706830-26706943,26707063-26707193,26707330-26707417,
           26707970-26708087,26708184-26708332,26708787-26708840,
           26708963-26709031,26709146-26709246,26709391-26709473,
           26709846-26710041,26710171-26710279
          Length = 403

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +3

Query: 288 VGRPSCRPAQIPLHAALEGRDVIGRREHNGWKTIPQYGKYSLG 416
           VGR S  P +      +  RD +   +H GWK    +G +S+G
Sbjct: 89  VGRSSVLPHKSYYSTVIMARDALALMDHLGWKKAHVFG-HSMG 130


>05_02_0065 -
           6276439-6276462,6276716-6276781,6277035-6277100,
           6277384-6277449,6277698-6277745,6278233-6278292,
           6278418-6278483,6278569-6278652,6278736-6278801,
           6278878-6279036,6279106-6279222,6279305-6279397,
           6279697-6279900,6280013-6280161,6280234-6280492
          Length = 508

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 9/22 (40%), Positives = 17/22 (77%)
 Frame = +2

Query: 146 KSHLTSEDIEVKTQYCIEKSSK 211
           +SH+ +ED++ KT+ C+E  +K
Sbjct: 380 QSHVPNEDLQPKTKQCVEDKNK 401


>09_02_0184 - 5485231-5485743
          Length = 170

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 15/39 (38%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
 Frame = +3

Query: 270 RDWLSTVGRPSCRPAQIPLHAALEG--RDVIGRREHNGW 380
           R WL    RP CR   +P  AAL G   +  G R  + W
Sbjct: 16  RLWLQQRRRPRCRSPGVPRTAALVGAAAEAGGGRRRSSW 54


>03_01_0084 +
           676538-676669,677828-677959,678085-678210,678820-678882,
           678964-679061,679133-679340,679859-679930,680016-680108,
           680297-680398,680568-680665,681059-681140,681274-681362,
           681960-682065,682145-682210,682527-682633,682907-683027,
           683226-683411,683490-683789,683887-683967,684061-684225,
           684297-684383,684476-684601,684750-684830,684917-684988,
           685353-685364
          Length = 934

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +3

Query: 429 TIMAYVIYIFSNNREAYWN 485
           ++M+  + + SNN EAYWN
Sbjct: 202 SVMSLFVSLVSNNAEAYWN 220


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,395,065
Number of Sequences: 37544
Number of extensions: 268419
Number of successful extensions: 498
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 492
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 498
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1186491600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)