Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_M03
         (537 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    24   1.1  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    21   8.0  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    21   8.0  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 11/37 (29%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = -2

Query: 392 WNSLPAVVFPPSYNITSFQCSVKRYL-CRPA*RTTYG 285
           ++S  +   PPSYN  ++  +++R+   +P   T YG
Sbjct: 530 YDSKSSTETPPSYNQLNYNENIERFFKSKPPVATMYG 566


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 21.0 bits (42), Expect = 8.0
 Identities = 6/11 (54%), Positives = 7/11 (63%)
 Frame = +3

Query: 273 DWLSTVGRPSC 305
           DWL  + RP C
Sbjct: 82  DWLHNIWRPDC 92


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 21.0 bits (42), Expect = 8.0
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +3

Query: 258 QEQSRDWLSTVGRP 299
           +E+ R W+ST+ RP
Sbjct: 450 KEKFRRWVSTMSRP 463


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,064
Number of Sequences: 438
Number of extensions: 3191
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15213684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)